Hierarchy For All Packages

Package Hierarchies:

• org.openscience.cdk,
• org.openscience.cdk.event,
• org.openscience.cdk.exception,
• org.openscience.cdk.graph.matrix,
• org.openscience.cdk.hash,
• org.openscience.cdk.interfaces,
• org.openscience.cdk.io,
• org.openscience.cdk.io.formats,
• org.openscience.cdk.io.iterator,
• org.openscience.cdk.io.iterator.event,
• org.openscience.cdk.io.listener,
• org.openscience.cdk.io.random,
• org.openscience.cdk.io.setting,
• org.openscience.cdk.isomorphism.matchers,
• org.openscience.cdk.libio.cml,
• org.openscience.cdk.tools

Class Hierarchy

• java.lang.Object
  • java.util.EventObject (implements java.io.Serializable)
    • org.openscience.cdk.io.ReaderEvent
  • org.openscience.cdk.io.formats.IChemFormatMatcher.MatchResult (implements java.lang.Comparable<T>)
  • org.openscience.cdk.io.setting.IOSetting (implements org.openscience.cdk.interfaces.ISetting)
  • org.openscience.cdk.tools.LoggingToolFactory
  • org.openscience.cdk.io.listener.PropertiesListener (implements org.openscience.cdk.io.listener.IReaderListener, org.openscience.cdk.io.listener.IWriterListener)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.openscience.cdk.exception.CDKException
        • org.openscience.cdk.exception.Intractable
        • org.openscience.cdk.exception.InvalidSmilesException
        • org.openscience.cdk.exception.NoSuchAtomTypeException
        • org.openscience.cdk.exception.UnsupportedChemObjectException
      • java.lang.RuntimeException
        • org.openscience.cdk.exception.NoSuchAtomException

Interface Hierarchy

• org.openscience.cdk.hash.AtomEncoder
• org.openscience.cdk.hash.AtomHashGenerator
• java.lang.AutoCloseable
  • java.io.Closeable
    • org.openscience.cdk.io.IChemObjectIO
      • org.openscience.cdk.io.IChemObjectReader
        • org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends java.util.Iterator<E>)
        • org.openscience.cdk.io.ISimpleChemObjectReader
      • org.openscience.cdk.io.IChemObjectWriter
      • org.openscience.cdk.io.iterator.event.IEventChemObjectReader
      • org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends org.openscience.cdk.io.IChemObjectReader, java.util.Iterator<E>)
      • org.openscience.cdk.io.ISimpleChemObjectReader
    • org.openscience.cdk.io.IChemObjectReader
      • org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends java.util.Iterator<E>)
      • org.openscience.cdk.io.ISimpleChemObjectReader
    • org.openscience.cdk.io.IChemObjectWriter
    • org.openscience.cdk.io.iterator.event.IEventChemObjectReader
    • org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends org.openscience.cdk.io.IChemObjectReader, java.util.Iterator<E>)
    • org.openscience.cdk.io.ISimpleChemObjectReader
  • org.openscience.cdk.io.IChemObjectIO
    • org.openscience.cdk.io.IChemObjectReader
      • org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends java.util.Iterator<E>)
      • org.openscience.cdk.io.ISimpleChemObjectReader
    • org.openscience.cdk.io.IChemObjectWriter
    • org.openscience.cdk.io.iterator.event.IEventChemObjectReader
    • org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends org.openscience.cdk.io.IChemObjectReader, java.util.Iterator<E>)
    • org.openscience.cdk.io.ISimpleChemObjectReader
  • org.openscience.cdk.io.IChemObjectReader
    • org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends java.util.Iterator<E>)
    • org.openscience.cdk.io.ISimpleChemObjectReader
  • org.openscience.cdk.io.IChemObjectWriter
  • org.openscience.cdk.io.iterator.event.IEventChemObjectReader
  • org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends org.openscience.cdk.io.IChemObjectReader, java.util.Iterator<E>)
  • org.openscience.cdk.io.ISimpleChemObjectReader
• java.lang.Cloneable
  • org.openscience.cdk.interfaces.IAdductFormula
  • org.openscience.cdk.interfaces.IAminoAcid
  • org.openscience.cdk.interfaces.IAtom
    • org.openscience.cdk.interfaces.IFragmentAtom
    • org.openscience.cdk.interfaces.IPDBAtom
    • org.openscience.cdk.interfaces.IPseudoAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
    • org.openscience.cdk.isomorphism.matchers.IQueryAtom
  • org.openscience.cdk.interfaces.IAtomContainer (also extends org.openscience.cdk.interfaces.IChemObject, org.openscience.cdk.interfaces.IChemObjectListener)
    • org.openscience.cdk.interfaces.IAminoAcid
    • org.openscience.cdk.interfaces.IBioPolymer
      • org.openscience.cdk.interfaces.IPDBPolymer
    • org.openscience.cdk.interfaces.ICrystal
    • org.openscience.cdk.interfaces.IMonomer
      • org.openscience.cdk.interfaces.IAminoAcid
      • org.openscience.cdk.interfaces.IPDBMonomer
    • org.openscience.cdk.interfaces.IPDBMonomer
    • org.openscience.cdk.interfaces.IPDBPolymer
    • org.openscience.cdk.interfaces.IPolymer
      • org.openscience.cdk.interfaces.IBioPolymer
        • org.openscience.cdk.interfaces.IPDBPolymer
      • org.openscience.cdk.interfaces.IPDBPolymer
    • org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer
    • org.openscience.cdk.interfaces.IRing
    • org.openscience.cdk.interfaces.IStrand
  • org.openscience.cdk.interfaces.IAtomContainerSet
    • org.openscience.cdk.interfaces.IRingSet
    • org.openscience.cdk.interfaces.ISubstance
  • org.openscience.cdk.interfaces.IAtomType
    • org.openscience.cdk.interfaces.IAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.interfaces.IPDBAtom
      • org.openscience.cdk.interfaces.IPseudoAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.interfaces.IFragmentAtom
    • org.openscience.cdk.interfaces.IPDBAtom
    • org.openscience.cdk.interfaces.IPseudoAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
    • org.openscience.cdk.isomorphism.matchers.IQueryAtom
  • org.openscience.cdk.interfaces.IBioPolymer
    • org.openscience.cdk.interfaces.IPDBPolymer
  • org.openscience.cdk.interfaces.IBond
    • org.openscience.cdk.isomorphism.matchers.IQueryBond
  • org.openscience.cdk.interfaces.ICDKObject
    • org.openscience.cdk.interfaces.IAdductFormula
    • org.openscience.cdk.interfaces.IAminoAcid
    • org.openscience.cdk.interfaces.IAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.interfaces.IPDBAtom
      • org.openscience.cdk.interfaces.IPseudoAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.interfaces.IAtomContainer (also extends org.openscience.cdk.interfaces.IChemObject, org.openscience.cdk.interfaces.IChemObjectListener)
      • org.openscience.cdk.interfaces.IAminoAcid
      • org.openscience.cdk.interfaces.IBioPolymer
        • org.openscience.cdk.interfaces.IPDBPolymer
      • org.openscience.cdk.interfaces.ICrystal
      • org.openscience.cdk.interfaces.IMonomer
        • org.openscience.cdk.interfaces.IAminoAcid
        • org.openscience.cdk.interfaces.IPDBMonomer
      • org.openscience.cdk.interfaces.IPDBMonomer
      • org.openscience.cdk.interfaces.IPDBPolymer
      • org.openscience.cdk.interfaces.IPolymer
        • org.openscience.cdk.interfaces.IBioPolymer
          • org.openscience.cdk.interfaces.IPDBPolymer
        • org.openscience.cdk.interfaces.IPDBPolymer
      • org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer
      • org.openscience.cdk.interfaces.IRing
      • org.openscience.cdk.interfaces.IStrand
    • org.openscience.cdk.interfaces.IAtomContainerSet
      • org.openscience.cdk.interfaces.IRingSet
      • org.openscience.cdk.interfaces.ISubstance
    • org.openscience.cdk.interfaces.IAtomType
      • org.openscience.cdk.interfaces.IAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.interfaces.IPDBAtom
      • org.openscience.cdk.interfaces.IPseudoAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.interfaces.IBioPolymer
      • org.openscience.cdk.interfaces.IPDBPolymer
    • org.openscience.cdk.interfaces.IBond
      • org.openscience.cdk.isomorphism.matchers.IQueryBond
    • org.openscience.cdk.interfaces.IChemFile
    • org.openscience.cdk.interfaces.IChemModel
    • org.openscience.cdk.interfaces.IChemObject
      • org.openscience.cdk.interfaces.IAminoAcid
      • org.openscience.cdk.interfaces.IAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IAtomContainer (also extends org.openscience.cdk.interfaces.IChemObjectListener)
        • org.openscience.cdk.interfaces.IAminoAcid
        • org.openscience.cdk.interfaces.IBioPolymer
          • org.openscience.cdk.interfaces.IPDBPolymer
        • org.openscience.cdk.interfaces.ICrystal
        • org.openscience.cdk.interfaces.IMonomer
          • org.openscience.cdk.interfaces.IAminoAcid
          • org.openscience.cdk.interfaces.IPDBMonomer
        • org.openscience.cdk.interfaces.IPDBMonomer
        • org.openscience.cdk.interfaces.IPDBPolymer
        • org.openscience.cdk.interfaces.IPolymer
          • org.openscience.cdk.interfaces.IBioPolymer
            • org.openscience.cdk.interfaces.IPDBPolymer
          • org.openscience.cdk.interfaces.IPDBPolymer
        • org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer
        • org.openscience.cdk.interfaces.IRing
        • org.openscience.cdk.interfaces.IStrand
      • org.openscience.cdk.interfaces.IAtomContainerSet
        • org.openscience.cdk.interfaces.IRingSet
        • org.openscience.cdk.interfaces.ISubstance
      • org.openscience.cdk.interfaces.IAtomType
        • org.openscience.cdk.interfaces.IAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.interfaces.IPDBAtom
          • org.openscience.cdk.interfaces.IPseudoAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.isomorphism.matchers.IQueryAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IBioPolymer
        • org.openscience.cdk.interfaces.IPDBPolymer
      • org.openscience.cdk.interfaces.IBond
        • org.openscience.cdk.isomorphism.matchers.IQueryBond
      • org.openscience.cdk.interfaces.IChemFile
      • org.openscience.cdk.interfaces.IChemModel
      • org.openscience.cdk.interfaces.IChemSequence
      • org.openscience.cdk.interfaces.ICrystal
      • org.openscience.cdk.interfaces.IElectronContainer
        • org.openscience.cdk.interfaces.IBond
          • org.openscience.cdk.isomorphism.matchers.IQueryBond
        • org.openscience.cdk.interfaces.ILonePair
        • org.openscience.cdk.isomorphism.matchers.IQueryBond
        • org.openscience.cdk.interfaces.ISingleElectron
      • org.openscience.cdk.interfaces.IElement
        • org.openscience.cdk.interfaces.IAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.interfaces.IPDBAtom
          • org.openscience.cdk.interfaces.IPseudoAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.isomorphism.matchers.IQueryAtom
        • org.openscience.cdk.interfaces.IAtomType
          • org.openscience.cdk.interfaces.IAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
            • org.openscience.cdk.interfaces.IPDBAtom
            • org.openscience.cdk.interfaces.IPseudoAtom
              • org.openscience.cdk.interfaces.IFragmentAtom
            • org.openscience.cdk.isomorphism.matchers.IQueryAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.interfaces.IPDBAtom
          • org.openscience.cdk.interfaces.IPseudoAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.isomorphism.matchers.IQueryAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IIsotope
          • org.openscience.cdk.interfaces.IAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
            • org.openscience.cdk.interfaces.IPDBAtom
            • org.openscience.cdk.interfaces.IPseudoAtom
              • org.openscience.cdk.interfaces.IFragmentAtom
            • org.openscience.cdk.isomorphism.matchers.IQueryAtom
          • org.openscience.cdk.interfaces.IAtomType
            • org.openscience.cdk.interfaces.IAtom
              • org.openscience.cdk.interfaces.IFragmentAtom
              • org.openscience.cdk.interfaces.IPDBAtom
              • org.openscience.cdk.interfaces.IPseudoAtom
                • org.openscience.cdk.interfaces.IFragmentAtom
              • org.openscience.cdk.isomorphism.matchers.IQueryAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
            • org.openscience.cdk.interfaces.IPDBAtom
            • org.openscience.cdk.interfaces.IPseudoAtom
              • org.openscience.cdk.interfaces.IFragmentAtom
            • org.openscience.cdk.isomorphism.matchers.IQueryAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.interfaces.IPDBAtom
          • org.openscience.cdk.interfaces.IPseudoAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.isomorphism.matchers.IQueryAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.interfaces.IIsotope
        • org.openscience.cdk.interfaces.IAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.interfaces.IPDBAtom
          • org.openscience.cdk.interfaces.IPseudoAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.isomorphism.matchers.IQueryAtom
        • org.openscience.cdk.interfaces.IAtomType
          • org.openscience.cdk.interfaces.IAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
            • org.openscience.cdk.interfaces.IPDBAtom
            • org.openscience.cdk.interfaces.IPseudoAtom
              • org.openscience.cdk.interfaces.IFragmentAtom
            • org.openscience.cdk.isomorphism.matchers.IQueryAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.interfaces.IPDBAtom
          • org.openscience.cdk.interfaces.IPseudoAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.isomorphism.matchers.IQueryAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.ILonePair
      • org.openscience.cdk.interfaces.IMapping
      • org.openscience.cdk.interfaces.IMonomer
        • org.openscience.cdk.interfaces.IAminoAcid
        • org.openscience.cdk.interfaces.IPDBMonomer
      • org.openscience.cdk.interfaces.IPDBAtom
      • org.openscience.cdk.interfaces.IPDBMonomer
      • org.openscience.cdk.interfaces.IPDBPolymer
      • org.openscience.cdk.interfaces.IPolymer
        • org.openscience.cdk.interfaces.IBioPolymer
          • org.openscience.cdk.interfaces.IPDBPolymer
        • org.openscience.cdk.interfaces.IPDBPolymer
      • org.openscience.cdk.interfaces.IPseudoAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer
      • org.openscience.cdk.isomorphism.matchers.IQueryBond
      • org.openscience.cdk.interfaces.IReaction
      • org.openscience.cdk.interfaces.IReactionScheme
      • org.openscience.cdk.interfaces.IReactionSet
        • org.openscience.cdk.interfaces.IReactionScheme
      • org.openscience.cdk.interfaces.IRing
      • org.openscience.cdk.interfaces.IRingSet
      • org.openscience.cdk.interfaces.ISingleElectron
      • org.openscience.cdk.interfaces.IStrand
      • org.openscience.cdk.interfaces.ISubstance
    • org.openscience.cdk.interfaces.IChemSequence
    • org.openscience.cdk.interfaces.ICrystal
    • org.openscience.cdk.interfaces.IDoubleBondStereochemistry
    • org.openscience.cdk.interfaces.IElectronContainer
      • org.openscience.cdk.interfaces.IBond
        • org.openscience.cdk.isomorphism.matchers.IQueryBond
      • org.openscience.cdk.interfaces.ILonePair
      • org.openscience.cdk.isomorphism.matchers.IQueryBond
      • org.openscience.cdk.interfaces.ISingleElectron
    • org.openscience.cdk.interfaces.IElement
      • org.openscience.cdk.interfaces.IAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IAtomType
        • org.openscience.cdk.interfaces.IAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.interfaces.IPDBAtom
          • org.openscience.cdk.interfaces.IPseudoAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.isomorphism.matchers.IQueryAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.interfaces.IIsotope
        • org.openscience.cdk.interfaces.IAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.interfaces.IPDBAtom
          • org.openscience.cdk.interfaces.IPseudoAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.isomorphism.matchers.IQueryAtom
        • org.openscience.cdk.interfaces.IAtomType
          • org.openscience.cdk.interfaces.IAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
            • org.openscience.cdk.interfaces.IPDBAtom
            • org.openscience.cdk.interfaces.IPseudoAtom
              • org.openscience.cdk.interfaces.IFragmentAtom
            • org.openscience.cdk.isomorphism.matchers.IQueryAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.interfaces.IPDBAtom
          • org.openscience.cdk.interfaces.IPseudoAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.isomorphism.matchers.IQueryAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IPDBAtom
      • org.openscience.cdk.interfaces.IPseudoAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.interfaces.IFragmentAtom
    • org.openscience.cdk.interfaces.IIsotope
      • org.openscience.cdk.interfaces.IAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IAtomType
        • org.openscience.cdk.interfaces.IAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.interfaces.IPDBAtom
          • org.openscience.cdk.interfaces.IPseudoAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.isomorphism.matchers.IQueryAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.interfaces.IPDBAtom
      • org.openscience.cdk.interfaces.IPseudoAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.interfaces.ILonePair
    • org.openscience.cdk.interfaces.IMapping
    • org.openscience.cdk.interfaces.IMolecularFormula
    • org.openscience.cdk.interfaces.IMolecularFormulaSet
      • org.openscience.cdk.interfaces.IAdductFormula
    • org.openscience.cdk.interfaces.IMonomer
      • org.openscience.cdk.interfaces.IAminoAcid
      • org.openscience.cdk.interfaces.IPDBMonomer
    • org.openscience.cdk.interfaces.IPDBAtom
    • org.openscience.cdk.interfaces.IPDBMonomer
    • org.openscience.cdk.interfaces.IPDBPolymer
    • org.openscience.cdk.interfaces.IPDBStructure
    • org.openscience.cdk.interfaces.IPolymer
      • org.openscience.cdk.interfaces.IBioPolymer
        • org.openscience.cdk.interfaces.IPDBPolymer
      • org.openscience.cdk.interfaces.IPDBPolymer
    • org.openscience.cdk.interfaces.IPseudoAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
    • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer
    • org.openscience.cdk.isomorphism.matchers.IQueryBond
    • org.openscience.cdk.interfaces.IReaction
    • org.openscience.cdk.interfaces.IReactionScheme
    • org.openscience.cdk.interfaces.IReactionSet
      • org.openscience.cdk.interfaces.IReactionScheme
    • org.openscience.cdk.interfaces.IRing
    • org.openscience.cdk.interfaces.IRingSet
    • org.openscience.cdk.interfaces.ISingleElectron
    • org.openscience.cdk.interfaces.IStereoElement<F,C>
      • org.openscience.cdk.interfaces.IDoubleBondStereochemistry
      • org.openscience.cdk.interfaces.ITetrahedralChirality
    • org.openscience.cdk.interfaces.IStrand
    • org.openscience.cdk.interfaces.ISubstance
    • org.openscience.cdk.interfaces.ITetrahedralChirality
  • org.openscience.cdk.interfaces.IChemFile
  • org.openscience.cdk.interfaces.IChemModel
  • org.openscience.cdk.interfaces.IChemObject
    • org.openscience.cdk.interfaces.IAminoAcid
    • org.openscience.cdk.interfaces.IAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.interfaces.IPDBAtom
      • org.openscience.cdk.interfaces.IPseudoAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.interfaces.IAtomContainer (also extends org.openscience.cdk.interfaces.IChemObjectListener)
      • org.openscience.cdk.interfaces.IAminoAcid
      • org.openscience.cdk.interfaces.IBioPolymer
        • org.openscience.cdk.interfaces.IPDBPolymer
      • org.openscience.cdk.interfaces.ICrystal
      • org.openscience.cdk.interfaces.IMonomer
        • org.openscience.cdk.interfaces.IAminoAcid
        • org.openscience.cdk.interfaces.IPDBMonomer
      • org.openscience.cdk.interfaces.IPDBMonomer
      • org.openscience.cdk.interfaces.IPDBPolymer
      • org.openscience.cdk.interfaces.IPolymer
        • org.openscience.cdk.interfaces.IBioPolymer
          • org.openscience.cdk.interfaces.IPDBPolymer
        • org.openscience.cdk.interfaces.IPDBPolymer
      • org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer
      • org.openscience.cdk.interfaces.IRing
      • org.openscience.cdk.interfaces.IStrand
    • org.openscience.cdk.interfaces.IAtomContainerSet
      • org.openscience.cdk.interfaces.IRingSet
      • org.openscience.cdk.interfaces.ISubstance
    • org.openscience.cdk.interfaces.IAtomType
      • org.openscience.cdk.interfaces.IAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.interfaces.IPDBAtom
      • org.openscience.cdk.interfaces.IPseudoAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.interfaces.IBioPolymer
      • org.openscience.cdk.interfaces.IPDBPolymer
    • org.openscience.cdk.interfaces.IBond
      • org.openscience.cdk.isomorphism.matchers.IQueryBond
    • org.openscience.cdk.interfaces.IChemFile
    • org.openscience.cdk.interfaces.IChemModel
    • org.openscience.cdk.interfaces.IChemSequence
    • org.openscience.cdk.interfaces.ICrystal
    • org.openscience.cdk.interfaces.IElectronContainer
      • org.openscience.cdk.interfaces.IBond
        • org.openscience.cdk.isomorphism.matchers.IQueryBond
      • org.openscience.cdk.interfaces.ILonePair
      • org.openscience.cdk.isomorphism.matchers.IQueryBond
      • org.openscience.cdk.interfaces.ISingleElectron
    • org.openscience.cdk.interfaces.IElement
      • org.openscience.cdk.interfaces.IAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IAtomType
        • org.openscience.cdk.interfaces.IAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.interfaces.IPDBAtom
          • org.openscience.cdk.interfaces.IPseudoAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.isomorphism.matchers.IQueryAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.interfaces.IIsotope
        • org.openscience.cdk.interfaces.IAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.interfaces.IPDBAtom
          • org.openscience.cdk.interfaces.IPseudoAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.isomorphism.matchers.IQueryAtom
        • org.openscience.cdk.interfaces.IAtomType
          • org.openscience.cdk.interfaces.IAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
            • org.openscience.cdk.interfaces.IPDBAtom
            • org.openscience.cdk.interfaces.IPseudoAtom
              • org.openscience.cdk.interfaces.IFragmentAtom
            • org.openscience.cdk.isomorphism.matchers.IQueryAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.interfaces.IPDBAtom
          • org.openscience.cdk.interfaces.IPseudoAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.isomorphism.matchers.IQueryAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IPDBAtom
      • org.openscience.cdk.interfaces.IPseudoAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.interfaces.IFragmentAtom
    • org.openscience.cdk.interfaces.IIsotope
      • org.openscience.cdk.interfaces.IAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IAtomType
        • org.openscience.cdk.interfaces.IAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.interfaces.IPDBAtom
          • org.openscience.cdk.interfaces.IPseudoAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.isomorphism.matchers.IQueryAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.interfaces.IPDBAtom
      • org.openscience.cdk.interfaces.IPseudoAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.interfaces.ILonePair
    • org.openscience.cdk.interfaces.IMapping
    • org.openscience.cdk.interfaces.IMonomer
      • org.openscience.cdk.interfaces.IAminoAcid
      • org.openscience.cdk.interfaces.IPDBMonomer
    • org.openscience.cdk.interfaces.IPDBAtom
    • org.openscience.cdk.interfaces.IPDBMonomer
    • org.openscience.cdk.interfaces.IPDBPolymer
    • org.openscience.cdk.interfaces.IPolymer
      • org.openscience.cdk.interfaces.IBioPolymer
        • org.openscience.cdk.interfaces.IPDBPolymer
      • org.openscience.cdk.interfaces.IPDBPolymer
    • org.openscience.cdk.interfaces.IPseudoAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
    • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer
    • org.openscience.cdk.isomorphism.matchers.IQueryBond
    • org.openscience.cdk.interfaces.IReaction
    • org.openscience.cdk.interfaces.IReactionScheme
    • org.openscience.cdk.interfaces.IReactionSet
      • org.openscience.cdk.interfaces.IReactionScheme
    • org.openscience.cdk.interfaces.IRing
    • org.openscience.cdk.interfaces.IRingSet
    • org.openscience.cdk.interfaces.ISingleElectron
    • org.openscience.cdk.interfaces.IStrand
    • org.openscience.cdk.interfaces.ISubstance
  • org.openscience.cdk.interfaces.IChemSequence
  • org.openscience.cdk.interfaces.ICrystal
  • org.openscience.cdk.interfaces.IDoubleBondStereochemistry
  • org.openscience.cdk.interfaces.IElectronContainer
    • org.openscience.cdk.interfaces.IBond
      • org.openscience.cdk.isomorphism.matchers.IQueryBond
    • org.openscience.cdk.interfaces.ILonePair
    • org.openscience.cdk.isomorphism.matchers.IQueryBond
    • org.openscience.cdk.interfaces.ISingleElectron
  • org.openscience.cdk.interfaces.IElement
    • org.openscience.cdk.interfaces.IAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.interfaces.IPDBAtom
      • org.openscience.cdk.interfaces.IPseudoAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.interfaces.IAtomType
      • org.openscience.cdk.interfaces.IAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.interfaces.IPDBAtom
      • org.openscience.cdk.interfaces.IPseudoAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.interfaces.IFragmentAtom
    • org.openscience.cdk.interfaces.IIsotope
      • org.openscience.cdk.interfaces.IAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IAtomType
        • org.openscience.cdk.interfaces.IAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.interfaces.IPDBAtom
          • org.openscience.cdk.interfaces.IPseudoAtom
            • org.openscience.cdk.interfaces.IFragmentAtom
          • org.openscience.cdk.isomorphism.matchers.IQueryAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.interfaces.IPDBAtom
      • org.openscience.cdk.interfaces.IPseudoAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.interfaces.IPDBAtom
    • org.openscience.cdk.interfaces.IPseudoAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
    • org.openscience.cdk.isomorphism.matchers.IQueryAtom
  • org.openscience.cdk.interfaces.IFragmentAtom
  • org.openscience.cdk.interfaces.IIsotope
    • org.openscience.cdk.interfaces.IAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.interfaces.IPDBAtom
      • org.openscience.cdk.interfaces.IPseudoAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.interfaces.IAtomType
      • org.openscience.cdk.interfaces.IAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.interfaces.IPDBAtom
        • org.openscience.cdk.interfaces.IPseudoAtom
          • org.openscience.cdk.interfaces.IFragmentAtom
        • org.openscience.cdk.isomorphism.matchers.IQueryAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.interfaces.IPDBAtom
      • org.openscience.cdk.interfaces.IPseudoAtom
        • org.openscience.cdk.interfaces.IFragmentAtom
      • org.openscience.cdk.isomorphism.matchers.IQueryAtom
    • org.openscience.cdk.interfaces.IFragmentAtom
    • org.openscience.cdk.interfaces.IPDBAtom
    • org.openscience.cdk.interfaces.IPseudoAtom
      • org.openscience.cdk.interfaces.IFragmentAtom
    • org.openscience.cdk.isomorphism.matchers.IQueryAtom
  • org.openscience.cdk.interfaces.ILonePair
  • org.openscience.cdk.interfaces.IMapping
  • org.openscience.cdk.interfaces.IMolecularFormula
  • org.openscience.cdk.interfaces.IMolecularFormulaSet
    • org.openscience.cdk.interfaces.IAdductFormula
  • org.openscience.cdk.interfaces.IMonomer
    • org.openscience.cdk.interfaces.IAminoAcid
    • org.openscience.cdk.interfaces.IPDBMonomer
  • org.openscience.cdk.interfaces.IPDBAtom
  • org.openscience.cdk.interfaces.IPDBMonomer
  • org.openscience.cdk.interfaces.IPDBPolymer
  • org.openscience.cdk.interfaces.IPDBStructure
  • org.openscience.cdk.interfaces.IPolymer
    • org.openscience.cdk.interfaces.IBioPolymer
      • org.openscience.cdk.interfaces.IPDBPolymer
    • org.openscience.cdk.interfaces.IPDBPolymer
  • org.openscience.cdk.interfaces.IPseudoAtom
    • org.openscience.cdk.interfaces.IFragmentAtom
  • org.openscience.cdk.isomorphism.matchers.IQueryAtom
  • org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer
  • org.openscience.cdk.isomorphism.matchers.IQueryBond
  • org.openscience.cdk.interfaces.IReaction
  • org.openscience.cdk.interfaces.IReactionScheme
  • org.openscience.cdk.interfaces.IReactionSet
    • org.openscience.cdk.interfaces.IReactionScheme
  • org.openscience.cdk.interfaces.IRing
  • org.openscience.cdk.interfaces.IRingSet
  • org.openscience.cdk.interfaces.ISingleElectron
  • org.openscience.cdk.interfaces.IStereoElement<F,C>
    • org.openscience.cdk.interfaces.IDoubleBondStereochemistry
    • org.openscience.cdk.interfaces.ITetrahedralChirality
  • org.openscience.cdk.interfaces.IStrand
  • org.openscience.cdk.interfaces.ISubstance
  • org.openscience.cdk.interfaces.ITetrahedralChirality
• org.openscience.cdk.hash.EnsembleHashGenerator
• java.util.EventListener
  • org.openscience.cdk.event.ICDKChangeListener
  • org.openscience.cdk.io.listener.IChemObjectIOListener
    • org.openscience.cdk.io.listener.IReaderListener
    • org.openscience.cdk.io.listener.IWriterListener
  • org.openscience.cdk.io.listener.IReaderListener
  • org.openscience.cdk.io.listener.IWriterListener
• org.openscience.cdk.interfaces.IChemObjectBuilder
• org.openscience.cdk.interfaces.IChemObjectChangeEvent
• org.openscience.cdk.interfaces.IChemObjectListener
  • org.openscience.cdk.interfaces.IAminoAcid
  • org.openscience.cdk.interfaces.IAtomContainer (also extends org.openscience.cdk.interfaces.IChemObject)
    • org.openscience.cdk.interfaces.IAminoAcid
    • org.openscience.cdk.interfaces.IBioPolymer
      • org.openscience.cdk.interfaces.IPDBPolymer
    • org.openscience.cdk.interfaces.ICrystal
    • org.openscience.cdk.interfaces.IMonomer
      • org.openscience.cdk.interfaces.IAminoAcid
      • org.openscience.cdk.interfaces.IPDBMonomer
    • org.openscience.cdk.interfaces.IPDBMonomer
    • org.openscience.cdk.interfaces.IPDBPolymer
    • org.openscience.cdk.interfaces.IPolymer
      • org.openscience.cdk.interfaces.IBioPolymer
        • org.openscience.cdk.interfaces.IPDBPolymer
      • org.openscience.cdk.interfaces.IPDBPolymer
    • org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer
    • org.openscience.cdk.interfaces.IRing
    • org.openscience.cdk.interfaces.IStrand
  • org.openscience.cdk.interfaces.IBioPolymer
    • org.openscience.cdk.interfaces.IPDBPolymer
  • org.openscience.cdk.interfaces.ICrystal
  • org.openscience.cdk.interfaces.IMonomer
    • org.openscience.cdk.interfaces.IAminoAcid
    • org.openscience.cdk.interfaces.IPDBMonomer
  • org.openscience.cdk.interfaces.IPDBMonomer
  • org.openscience.cdk.interfaces.IPDBPolymer
  • org.openscience.cdk.interfaces.IPolymer
    • org.openscience.cdk.interfaces.IBioPolymer
      • org.openscience.cdk.interfaces.IPDBPolymer
    • org.openscience.cdk.interfaces.IPDBPolymer
  • org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer
  • org.openscience.cdk.interfaces.IRing
  • org.openscience.cdk.interfaces.IStrand
• org.openscience.cdk.io.IChemObjectReaderErrorHandler
• org.openscience.cdk.libio.cml.ICMLCustomizer
• org.openscience.cdk.graph.matrix.IGraphMatrix
• org.openscience.cdk.tools.ILoggingTool
• org.openscience.cdk.io.formats.IResourceFormat
  • org.openscience.cdk.io.formats.IChemFormat
    • org.openscience.cdk.io.formats.IChemFormatMatcher
  • org.openscience.cdk.io.formats.IChemFormatMatcher
• org.openscience.cdk.interfaces.ISetting
• java.util.Iterator<E>
  • org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends org.openscience.cdk.io.IChemObjectReader)
  • org.openscience.cdk.io.random.IRandomAccessChemObjectReader<T>
  • java.util.ListIterator<E>
    • org.openscience.cdk.io.random.IRandomAccessChemObjectReader<T>
• org.openscience.cdk.hash.MoleculeHashGenerator

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.openscience.cdk.interfaces.ITetrahedralChirality.Stereo
    • org.openscience.cdk.interfaces.IReaction.Direction
    • org.openscience.cdk.interfaces.IDoubleBondStereochemistry.Conformation
    • org.openscience.cdk.interfaces.IBond.Order
    • org.openscience.cdk.interfaces.IBond.Stereo
    • org.openscience.cdk.interfaces.IAtomType.Hybridization
    • org.openscience.cdk.io.IChemObjectReader.Mode
    • org.openscience.cdk.io.setting.IOSetting.Importance
    • org.openscience.cdk.ReactionRole