Uses of Interface
org.openscience.cdk.interfaces.IMonomer

Packages that use IMonomer

Package	Description
org.openscience.cdk.interfaces

Uses of IMonomer in org.openscience.cdk.interfaces

Subinterfaces of IMonomer in org.openscience.cdk.interfaces

Modifier and Type	Interface and Description
interface	IAminoAcid A AminoAcid is Monomer which stores additional amino acid specific informations, like the N-terminus atom.
interface	IPDBMonomer Represents the idea of an protein monomer as found in PDB files.

Methods in org.openscience.cdk.interfaces that return IMonomer

Modifier and Type	Method and Description
IMonomer	IMonomer.clone() Returns a deep clone of this IChemObject.
IMonomer	IStrand.getMonomer(String cName) Retrieve a Monomer object by specifying its name.
IMonomer	IPolymer.getMonomer(String cName) Retrieve a Monomer object by specifying its name.
IMonomer	IBioPolymer.getMonomer(String monName, String strandName) Retrieve a Monomer object by specifying its name.

Methods in org.openscience.cdk.interfaces that return types with arguments of type IMonomer

Modifier and Type	Method and Description
Map<String,IMonomer>	IStrand.getMonomers() Returns the monomers in this strand.

Methods in org.openscience.cdk.interfaces with parameters of type IMonomer

Modifier and Type	Method and Description
void	IStrand.addAtom(IAtom oAtom, IMonomer oMonomer) Adds the atom oAtom to a specific Monomer.
void	IPolymer.addAtom(IAtom oAtom, IMonomer oMonomer) Adds the atom oAtom to a specified Monomer.
void	IBioPolymer.addAtom(IAtom oAtom, IMonomer oMonomer, IStrand oStrand) Adds the atom to a specified Strand and a specified Monomer.
void	IPDBPolymer.addAtom(IPDBAtom oAtom, IMonomer oMonomer, IStrand oStrand) Adds the atom to a specified Strand and a specified Monomer.