001/** 002 * The contents of this file are subject to the Mozilla Public License Version 1.1 003 * (the "License"); you may not use this file except in compliance with the License. 004 * You may obtain a copy of the License at http://www.mozilla.org/MPL/ 005 * Software distributed under the License is distributed on an "AS IS" basis, 006 * WITHOUT WARRANTY OF ANY KIND, either express or implied. See the License for the 007 * specific language governing rights and limitations under the License. 008 * 009 * The Original Code is "Terser.java". Description: 010 * "Wraps a message to provide access to fields using a more terse syntax." 011 * 012 * The Initial Developer of the Original Code is University Health Network. Copyright (C) 013 * 2002. All Rights Reserved. 014 * 015 * Contributor(s): Ryan W. Gross (General Electric Corporation - Healthcare IT). 016 * 017 * Alternatively, the contents of this file may be used under the terms of the 018 * GNU General Public License (the ?GPL?), in which case the provisions of the GPL are 019 * applicable instead of those above. If you wish to allow use of your version of this 020 * file only under the terms of the GPL and not to allow others to use your version 021 * of this file under the MPL, indicate your decision by deleting the provisions above 022 * and replace them with the notice and other provisions required by the GPL License. 023 * If you do not delete the provisions above, a recipient may use your version of 024 * this file under either the MPL or the GPL. 025 * 026 */ 027 028package ca.uhn.hl7v2.util; 029 030import ca.uhn.hl7v2.model.*; 031import ca.uhn.hl7v2.HL7Exception; 032import java.util.StringTokenizer; 033 034import org.slf4j.Logger; 035import org.slf4j.LoggerFactory; 036 037/** 038 * <p> 039 * Wraps a message to provide access to fields using a terse location specification syntax. For 040 * example: 041 * </p> 042 * <p> 043 * <code>terser.set("MSH-9-3", "ADT_A01");</code> <br> 044 * can be used instead of <br> 045 * <code>message.getMSH().getMessageType().getMessageStructure().setValue("ADT_A01"); </code> 046 * </p> 047 * <p> 048 * The syntax of a location spec is as follows: 049 * </p> 050 * <p> 051 * location_spec: 052 * <code>segment_path_spec "-" field ["(" rep ")"] ["-" component ["-" subcomponent]] </code> 053 * </p> 054 * <p> 055 * ... where rep, field, component, and subcomponent are integers (representing, respectively, the 056 * field repetition (starting at 0), and the field number, component number, and subcomponent 057 * numbers (starting at 1). Omitting the rep is equivalent to specifying 0; omitting the component 058 * or subcomponent is equivalent to specifying 1. 059 * </p> 060 * <p> 061 * The syntax for the segment_path_spec is as follows: 062 * </p> 063 * <p> 064 * segment_path_spec: </code> ["/"] (group_spec ["(" rep ")"] "/")* segment_spec ["(" rep 065 * ")"]</code> 066 * </p> 067 * <p> 068 * ... where rep has the same meaning as for fields. 069 * </p> 070 * <p> 071 * A leading "/" indicates that navigation to the 072 * location begins at the root of the message; omitting this indicates that navigation begins at 073 * the current location of the underlying SegmentFinder (see getFinder() -- this allows manual 074 * navigation if desired). The syntax for group_spec is: 075 * </p> 076 * <p> 077 * group_spec: <code>["."] group_name_pattern</code> 078 * </p> 079 * <p> 080 * Here, a . indicates that the group should be searched for (using a SegmentFinder) starting at the 081 * current location in the message. The wildcards "*" and "?" represent any number of arbitrary 082 * characters, and a single arbitrary character, respectively. For example, "M*" and "?S?" match 083 * MSH. The first group with a name that matches the given group_name_pattern will be matched. 084 * </p> 085 * <p> 086 * The segment_spec is analogous to the group_spec. 087 * </p> 088 * <p> 089 * As another example, the following subcomponent in an SIU_S12 message: 090 * <p> 091 * <p> 092 * <code>msg.getSIU_S12_RGSAISNTEAIGNTEAILNTEAIPNTE(1).getSIU_S12_AIGNTE().getAIG().getResourceGroup(1).getIdentifier();</code> 093 * </p> 094 * </p> ... is referenced by all of the following location_spec: </p> 095 * <p> 096 * <code>/SIU_S12_RGSAISNTEAIGNTEAILNTEAIPNTE(1)/SIU_S12_AIGNTE/AIG-5(1)-1 <br> 097 * /*AIG*(1)/SIU_S12_AIGNTE/AIG-5(1)-1 <br> 098 * /*AIG*(1)/.AIG-5(1) <code> 099 * </p> 100 * <p> 101 * The search function only iterates through rep 0 of each group. Thus if rep 0 of the first group 102 * in this example was desired instead of rep 1, the following syntax would also work (since there 103 * is only one AIG segment position in SUI_S12): 104 * </p> 105 * <p> 106 * <code>/.AIG-5(1)</code> 107 * </p> 108 * 109 * @author Bryan Tripp 110 * @author Ryan W. Gross (General Electric Corporation - Healthcare IT). 111 */ 112public class Terser { 113 114 private SegmentFinder finder; 115 private static Logger log = LoggerFactory.getLogger(Terser.class); 116 117 /** Creates a new instance of Terser 118 * 119 * @param message message for which the Terser is created 120 */ 121 public Terser(Message message) { 122 if (message == null) { 123 throw new NullPointerException("Message may not be null"); 124 } 125 finder = new SegmentFinder(message); 126 } 127 128 /** 129 * Returns the string value of the Primitive at the given location. 130 * 131 * @param segment the segment from which to get the primitive 132 * @param field the field number (indexed from 1) 133 * @param rep the field repetition (indexed from 0) 134 * @param component the component number (indexed from 1, use 1 for primitive field) 135 * @param subcomponent the subcomponent number (indexed from 1, use 1 for primitive component) 136 * @return string value of the Primitive at the given location 137 * @throws HL7Exception if the primitive could not be obtained 138 */ 139 public static String get(Segment segment, int field, int rep, int component, int subcomponent) throws HL7Exception { 140 if (segment == null) { 141 throw new NullPointerException("segment may not be null"); 142 } 143 if (rep < 0) { 144 throw new IllegalArgumentException("rep must not be negative"); 145 } 146 if (component < 1) { 147 throw new IllegalArgumentException( 148 "component must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); 149 } 150 if (subcomponent < 1) { 151 throw new IllegalArgumentException( 152 "subcomponent must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); 153 } 154 155 Primitive prim = getPrimitive(segment, field, rep, component, subcomponent); 156 return prim.getValue(); 157 } 158 159 /** 160 * Sets the string value of the Primitive at the given location. 161 * 162 * @param segment the segment from which to get the primitive 163 * @param field the field number (indexed from 1) 164 * @param rep the field repetition (indexed from 0) 165 * @param component the component number (indexed from 1, use 1 for primitive field) 166 * @param subcomponent the subcomponent number (indexed from 1, use 1 for primitive component) 167 * @param value value to be set 168 * @throws HL7Exception if the value could not be set 169 */ 170 public static void set(Segment segment, int field, int rep, int component, int subcomponent, String value) 171 throws HL7Exception { 172 if (segment == null) { 173 throw new NullPointerException("segment may not be null"); 174 } 175 if (rep < 0) { 176 throw new IllegalArgumentException("rep must not be negative"); 177 } 178 if (component < 1) { 179 throw new IllegalArgumentException( 180 "component must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); 181 } 182 if (subcomponent < 1) { 183 throw new IllegalArgumentException( 184 "subcomponent must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); 185 } 186 187 Primitive prim = getPrimitive(segment, field, rep, component, subcomponent); 188 prim.setValue(value); 189 } 190 191 /** 192 * Returns the Primitive object at the given location. 193 */ 194 private static Primitive getPrimitive(Segment segment, int field, int rep, int component, int subcomponent) 195 throws HL7Exception { 196 Type type = segment.getField(field, rep); 197 return getPrimitive(type, component, subcomponent); 198 } 199 200 /** 201 * Returns the Primitive object at the given location in the given field. It is intended that 202 * the given type be at the field level, although extra components will be added blindly if, for 203 * example, you provide a primitive subcomponent instead and specify component or subcomponent > 204 * 1 205 * 206 * @param type the type from which to get the primitive 207 * @param component the component number (indexed from 1, use 1 for primitive field) 208 * @param subcomponent the subcomponent number (indexed from 1, use 1 for primitive component) 209 * @return the Primitive object at the given location 210 */ 211 public static Primitive getPrimitive(final Type type, final int component, final int subcomponent) { 212 if (type == null) { 213 throw new NullPointerException("type may not be null"); 214 } 215 if (component < 1) { 216 throw new IllegalArgumentException( 217 "component must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); 218 } 219 if (subcomponent < 1) { 220 throw new IllegalArgumentException( 221 "subcomponent must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); 222 } 223 224 Type comp = getComponent(type, component); 225 if (type instanceof Varies && comp instanceof GenericPrimitive && subcomponent > 1) { 226 try { 227 final Varies varies = (Varies) type; 228 final GenericComposite comp2 = new GenericComposite(type.getMessage()); 229 varies.setData(comp2); 230 comp = getComponent(type, component); 231 } catch (final DataTypeException de) { 232 final String message = "Unexpected exception copying data to generic composite. This is probably a bug within HAPI. " 233 + de.getMessage(); 234 log.error(message, de); 235 throw new Error(message); 236 } 237 } 238 final Type sub = getComponent(comp, subcomponent); 239 return getPrimitive(sub); 240 } 241 242 /** 243 * Attempts to extract a Primitive from the given type. If it's a composite, drills down through 244 * first components until a primitive is reached. 245 */ 246 private static Primitive getPrimitive(Type type) { 247 if (type instanceof Primitive) { 248 return (Primitive) type; 249 } 250 if (type instanceof Composite) { 251 try { 252 return getPrimitive(((Composite) type).getComponent(0)); 253 } catch (HL7Exception e) { 254 throw new RuntimeException("Internal error: HL7Exception thrown on Composite.getComponent(0)."); 255 } 256 } 257 return getPrimitive(((Varies) type).getData()); 258 } 259 260 /** 261 * Returns the component (or sub-component, as the case may be) at the given index. If it does 262 * not exist, it is added as an "extra component". If comp > 1 is requested from a Varies with 263 * GenericPrimitive data, the data is set to GenericComposite (this avoids the creation of a 264 * chain of ExtraComponents on GenericPrimitives). Components are numbered from 1. 265 */ 266 private static Type getComponent(Type type, int comp) { 267 268 if (type instanceof Primitive && comp == 1) { 269 return type; 270 } 271 if (type instanceof Composite) { 272 if (comp <= numStandardComponents(type) || type instanceof GenericComposite) { 273 try { 274 return ((Composite) type).getComponent(comp - 1); 275 } catch (DataTypeException e) { 276 throw new RuntimeException( 277 "Internal error: HL7Exception thrown on getComponent(x) where x < # standard components.", 278 e); 279 } 280 } 281 } 282 if (Varies.class.isAssignableFrom(type.getClass())) { 283 Varies v = (Varies) type; 284 try { 285 if (comp > 1 && GenericPrimitive.class.isAssignableFrom(v.getData().getClass())) 286 v.setData(new GenericComposite(v.getMessage())); 287 } catch (DataTypeException e) { 288 throw new RuntimeException("Unexpected exception copying data to generic composite: " + e.getMessage(), 289 e); 290 } 291 292 return getComponent(v.getData(), comp); 293 } 294 295 return type.getExtraComponents().getComponent(comp - numStandardComponents(type) - 1); 296 } 297 298 /** 299 * <p> 300 * Gets the string value of the field specified. See the class docs for syntax of the location 301 * spec. 302 * </p> 303 * <p> 304 * If a repetition is omitted for a repeating segment or field, the first rep is used. If the 305 * component or subcomponent is not specified for a composite field, the first component is used 306 * (this allows one to write code that will work with later versions of the HL7 standard). 307 * 308 * @param spec field specification 309 * @return string value of the specified field 310 * @throws HL7Exception if the primitive could not be obtained 311 */ 312 public String get(String spec) throws HL7Exception { 313 StringTokenizer tok = new StringTokenizer(spec, "-", false); 314 Segment segment = getSegment(tok.nextToken()); 315 316 int[] ind = getIndices(spec); 317 return get(segment, ind[0], ind[1], ind[2], ind[3]); 318 } 319 320 /** 321 * Returns the segment specified in the given segment_path_spec. 322 * 323 * @param segSpec segment specification 324 * @return the segment specified 325 * @throws HL7Exception if the segment could not be obtained 326 */ 327 public Segment getSegment(String segSpec) throws HL7Exception { 328 Segment seg = null; 329 330 if (segSpec.startsWith("/")) { 331 getFinder().reset(); 332 } 333 334 StringTokenizer tok = new StringTokenizer(segSpec, "/", false); 335 SegmentFinder finder = getFinder(); 336 while (tok.hasMoreTokens()) { 337 String pathSpec = tok.nextToken(); 338 Terser.PathSpec ps = parsePathSpec(pathSpec); 339 ps.isGroup = tok.hasMoreTokens(); 340 if (ps.isGroup) { 341 Group g = ps.find ? 342 finder.findGroup(ps.pattern, ps.rep) : 343 finder.getGroup(ps.pattern, ps.rep); 344 finder = new SegmentFinder(g); 345 } else { 346 seg = ps.find ? 347 finder.findSegment(ps.pattern, ps.rep) : 348 finder.getSegment(ps.pattern, ps.rep); 349 } 350 } 351 352 return seg; 353 } 354 355 /** Gets path information from a path spec. */ 356 private PathSpec parsePathSpec(String spec) throws HL7Exception { 357 PathSpec ps = new PathSpec(); 358 359 if (spec.startsWith(".")) { 360 ps.find = true; 361 spec = spec.substring(1); 362 } else { 363 ps.find = false; 364 } 365 366 if (spec.length() == 0) { 367 throw new HL7Exception("Invalid path (some path element is either empty or contains only a dot)"); 368 } 369 StringTokenizer tok = new StringTokenizer(spec, "()", false); 370 ps.pattern = tok.nextToken(); 371 if (tok.hasMoreTokens()) { 372 String repString = tok.nextToken(); 373 try { 374 ps.rep = Integer.parseInt(repString); 375 } catch (NumberFormatException e) { 376 throw new HL7Exception(repString + " is not a valid rep #"); 377 } 378 } else { 379 ps.rep = 0; 380 } 381 return ps; 382 } 383 384 /** 385 * Given a Terser path, returns an array containing field num, field rep, component, and 386 * subcomponent. 387 * 388 * @param spec field specification 389 * @return an array containing field num, field rep, component, and subcomponent 390 * @throws HL7Exception if the field does not exist 391 */ 392 public static int[] getIndices(String spec) throws HL7Exception { 393 StringTokenizer tok = new StringTokenizer(spec, "-", false); 394 tok.nextToken(); // skip over segment 395 if (!tok.hasMoreTokens()) 396 throw new HL7Exception("Must specify field in spec " + spec); 397 try { 398 StringTokenizer fieldSpec = new StringTokenizer(tok.nextToken(), "()", false); 399 int fieldNum = Integer.parseInt(fieldSpec.nextToken()); 400 int fieldRep = fieldSpec.hasMoreTokens() ? 401 Integer.parseInt(fieldSpec.nextToken()) : 0; 402 int component = tok.hasMoreTokens() ? 403 Integer.parseInt(tok.nextToken()) : 1; 404 int subcomponent = tok.hasMoreTokens() ? 405 Integer.parseInt(tok.nextToken()) : 1; 406 return new int[] { fieldNum, fieldRep, component, subcomponent }; 407 } catch (NumberFormatException e) { 408 throw new HL7Exception("Invalid integer in spec " + spec); 409 } 410 } 411 412 413 /** 414 * Sets the string value of the field specified. See class docs for location spec syntax. 415 * 416 * @param spec primitive path specification 417 * @param value value to be set 418 * @throws HL7Exception if the primitive does not exist 419 */ 420 public void set(String spec, String value) throws HL7Exception { 421 StringTokenizer tok = new StringTokenizer(spec, "-", false); 422 Segment segment = getSegment(tok.nextToken()); 423 424 int[] ind = getIndices(spec); 425 log.trace("Setting {} seg: {} ind: {} {} {} {}", new Object[] { spec, segment.getName(), ind[0], ind[1], 426 ind[2], ind[3] }); 427 set(segment, ind[0], ind[1], ind[2], ind[3], value); 428 } 429 430 /** 431 * Returns the number of sub-components in the specified component, i.e. the number of standard 432 * sub-components (e.g. 6 for CE) plus any extra components that that have been added at 433 * runtime. 434 * 435 * @param type composite type 436 * @param component numbered from 1 437 * @return number of sub-components in the specified component 438 */ 439 public static int numSubComponents(Type type, int component) { 440 if (component == 1 && Primitive.class.isAssignableFrom(type.getClass())) { 441 // note that getComponent(primitive, 1) below returns the primitive 442 // itself -- if we do numComponents on it, we'll end up with the 443 // number of components in the field, not the number of subcomponents 444 return 1; 445 } 446 Type comp = getComponent(type, component); 447 return numComponents(comp); 448 } 449 450 /** 451 * Returns the number of components in the given type, i.e. the number of standard components 452 * (e.g. 6 for CE) plus any extra components that have been added at runtime. 453 * 454 * @param t composite type 455 * @return the number of components in the given type 456 */ 457 public static int numComponents(Type t) { 458 if (!(t instanceof Varies)) { 459 return numStandardComponents(t) + t.getExtraComponents().numComponents(); 460 } 461 return numComponents(((Varies) t).getData()); 462 } 463 464 private static int numStandardComponents(Type t) { 465 if (t instanceof Composite) { 466 return ((Composite) t).getComponents().length; 467 } 468 if (t instanceof Varies) { 469 return numStandardComponents(((Varies) t).getData()); 470 } 471 return 1; 472 } 473 474 /** 475 * Returns the segment finder used by this Terser. Navigating the finder will influence the 476 * behaviour of the Terser accordingly. Ie when the full path of the segment is not specified 477 * the segment will be sought beginning at the current location of the finder. 478 * 479 * @return the segment finder used by this Terser 480 */ 481 public SegmentFinder getFinder() { 482 return finder; 483 } 484 485 /** Struct for information about a step in a segment path. */ 486 private class PathSpec { 487 public String pattern; 488 public boolean isGroup; 489 public boolean find; 490 public int rep; 491 } 492}