4.0.0 io.github.bigbio.external pia 1.3.22 PIA - Protein Inference Algorithms https://github.com/mpc-bioinformatics/pia Protein inference toolbox that contains algorithms to merge results from search engines in mass spectrometry and proteomics. It provides functionalities to compute FDR at different levels including PSM, peptide and Protein levels. BSD license https://raw.githubusercontent.com/bigbio/pia/master/LICENSE repo http://www.ruhr-uni-bochum.de/mpc/medical_bioinformatics Medizinisches Proteom-Center, Medical Bioinformatics julianu Julian Uszkoreit Medizinisches Proteom-Center, Medical Bioinformatics http://www.ruhr-uni-bochum.de/mpc/medical_bioinformatics developer Europe/Berlin ypriverol Yasset Perez-Riverol EMBL-EBI http://bigbio.xyz developer Europe/London UTF-8 4.13.1 4.1 1.2.12-SNAPSHOT 3.0.13 2.1.9 0.23 3.6.1 1.13.0 4.2.8 1.0.392 3.20.1 3.1.1 2.12.1 2.8.1 4.6.1 0.0.1-SNAPSHOT 0.0.1-SNAPSHOT 0.0.1-SNAPSHOT 3.2.1 2.0.30 1.18.2 org.projectlombok lombok ${lombock.version} junit junit ${junit.version} test info.picocli picocli ${picocli.version} org.apache.commons commons-lang3 ${commons-lang3.version} org.apache.commons commons-collections4 ${commons-collections.version} uk.ac.ebi.jmzidml jmzidentml ${jmzidentml.version} javax.xml.bind jaxb-api 2.3.1 com.sun.xml.bind jaxb-impl 2.3.1 com.sun.xml.bind jaxb-core 2.3.0 uk.ac.ebi.pride.utilities pride-mod ${pride-mod.version} io.github.bigbio.external jmztab ${jmztab.version} uk.ac.ebi.pride px-submission-core uk.ac.ebi.pride px-submission-core ${px.submission.core.version} com.google.code.gson gson ${gson.version} psidev.psi.tools xxindex ${xxindex.version} com.compomics mascotdatfile ${mascotdatfile.version} de.proteinms.xtandemparser xtandem-parser ${xtandem-parser.version} org.biojava biojava-ontology ${biojava-ontology.version} org.apache.logging.log4j log4j-core de.mpc BaseLib ${BaseLib.version} de.mpc CvtBaseLib ${CvtBaseLib.version} de.mpc PDLibrary ${PDLibrary.version} com.almworks.sqlite4java sqlite4java ${sqlite4java.version} org.xerial sqlite-jdbc ${sqlite-jdbc.version} org.ehcache ehcache ${ehcache.version} xerces xercesImpl ${xercesImpl.version} test com.compomics utilities 5.0.18 src/main/resources true org.apache.maven.plugins maven-compiler-plugin 3.8.1 1.8 1.8 org.apache.maven.plugins maven-jar-plugin 3.1.2 src/test src/test/*.class true true lib/ de.mpc.pia.modeller.PIAModeller maven-assembly-plugin 3.1.1 false ${project.basedir}/assembly.xml assembly package single org.apache.maven.plugins maven-source-plugin 3.0.0 attach-sources jar-no-fork org.apache.maven.plugins maven-javadoc-plugin 3.1.1 attach-javadocs jar -Xdoclint:none org.apache.maven.plugins maven-gpg-plugin 3.0.1 --pinentry-mode loopback sign-artifacts verify sign org.sonatype.plugins nexus-staging-maven-plugin 1.6.8 true ossrh https://oss.sonatype.org/ false pst-release EBI Nexus Repository https://www.ebi.ac.uk/Tools/maven/repos/content/repositories/pst-release pst-snapshots EBI Nexus Snapshots Repository https://www.ebi.ac.uk/Tools/maven/repos/content/repositories/pst-snapshots sonatype-release Central Repository OSSRH https://oss.sonatype.org/service/local/staging/deploy/maven2 sonatype-snapshopt Central Repository OSSRH https://oss.sonatype.org/content/repositories/snapshots sonatype-release Central Repository OSSRH https://oss.sonatype.org/service/local/staging/deploy/maven2 sonatype-snapshopt Central Repository OSSRH https://oss.sonatype.org/content/repositories/snapshots scm:git:https://github.com/bigbio/pia.git scm:git:https://github.com/bigbio/pia.git https://github.com/bigbio/pia.git HEAD