Hierarchy For All Packages

Package Hierarchies:

• com.wcohen.ss,
• com.wcohen.ss.abbvGapsHmm,
• com.wcohen.ss.api,
• com.wcohen.ss.expt,
• com.wcohen.ss.lookup,
• com.wcohen.ss.tokens

Class Hierarchy

• java.lang.Object
  • com.wcohen.ss.abbvGapsHmm.AbbreviationAlignmentContainer<T,S>
  • com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
  • com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
    • com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator
      • com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
    • com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator
      • com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmExpectationEvaluator
  • com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
    • com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator.BackwardEvalParam
    • com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator.ForwardEvalParam
  • com.wcohen.ss.AbstractStringDistance (implements com.wcohen.ss.api.StringDistance, com.wcohen.ss.api.StringDistanceLearner)
    • com.wcohen.ss.AbstractSourcedTokenizedStringDistance
      • com.wcohen.ss.AbstractSourcedStatisticalTokenDistance
        • com.wcohen.ss.SourcedTFIDF
          • com.wcohen.ss.SourcedSoftTFIDF
    • com.wcohen.ss.AbstractTokenizedStringDistance
      • com.wcohen.ss.AbstractStatisticalTokenDistance
        • com.wcohen.ss.AbbreviationAlignment
        • com.wcohen.ss.Mixture
        • com.wcohen.ss.SoftTokenFelligiSunter
        • com.wcohen.ss.TagLink
        • com.wcohen.ss.TFIDF
          • com.wcohen.ss.SoftTFIDF
            • com.wcohen.ss.JaroTFIDF
            • com.wcohen.ss.JaroWinklerTFIDF
            • com.wcohen.ss.MongeElkanTFIDF
        • com.wcohen.ss.TokenFelligiSunter
      • com.wcohen.ss.JensenShannonDistance
        • com.wcohen.ss.DirichletJS
        • com.wcohen.ss.JelinekMercerJS
        • com.wcohen.ss.UnsmoothedJS
      • com.wcohen.ss.Level2
        • com.wcohen.ss.Level2Jaro
        • com.wcohen.ss.Level2JaroWinkler
        • com.wcohen.ss.Level2Levenstein
        • com.wcohen.ss.Level2MongeElkan
    • com.wcohen.ss.AffineGap
      • com.wcohen.ss.MongeElkan
    • com.wcohen.ss.ApproxNeedlemanWunsch
    • com.wcohen.ss.Jaccard
    • com.wcohen.ss.Jaro
    • com.wcohen.ss.NeedlemanWunsch
      • com.wcohen.ss.Levenstein
        • com.wcohen.ss.ScaledLevenstein
    • com.wcohen.ss.SmithWaterman
    • com.wcohen.ss.tokens.TagLinkToken
    • com.wcohen.ss.WinklerRescorer
      • com.wcohen.ss.JaroWinkler
  • com.wcohen.ss.abbvGapsHmm.Acronym (implements java.lang.Comparable<T>)
  • com.wcohen.ss.abbvGapsHmm.Acronym.AcronymFrequencyComparator (implements java.util.Comparator<T>)
  • com.wcohen.ss.abbvGapsHmm.Acronym.AcronymShortFormComparator (implements java.util.Comparator<T>)
  • com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
  • com.wcohen.ss.BasicDistanceInstanceIterator (implements com.wcohen.ss.api.DistanceInstanceIterator)
  • com.wcohen.ss.BasicSourcedStringWrapperIterator (implements com.wcohen.ss.api.SourcedStringWrapperIterator)
  • com.wcohen.ss.BasicStringWrapper (implements com.wcohen.ss.api.StringWrapper)
    • com.wcohen.ss.expt.MatchData.Instance (implements com.wcohen.ss.api.IdentifiedStringWrapper, com.wcohen.ss.api.SourcedStringWrapper)
    • com.wcohen.ss.MultiStringWrapper
    • com.wcohen.ss.expt.SourcedMatchData.Instance (implements com.wcohen.ss.api.SourcedStringWrapper)
    • com.wcohen.ss.SourcedTFIDF.UnitVector
    • com.wcohen.ss.TagLink.UnitVector
    • com.wcohen.ss.TFIDF.UnitVector
  • com.wcohen.ss.BasicStringWrapperIterator (implements com.wcohen.ss.api.StringWrapperIterator)
  • com.wcohen.ss.tokens.BasicToken (implements java.lang.Comparable<T>, java.io.Serializable, com.wcohen.ss.api.Token)
    • com.wcohen.ss.tokens.BasicSourcedToken (implements com.wcohen.ss.api.SourcedToken)
  • com.wcohen.ss.expt.Blocker
    • com.wcohen.ss.expt.AbbreviationsBlocker
    • com.wcohen.ss.expt.NullBlocker
    • com.wcohen.ss.expt.TokenBlocker
      • com.wcohen.ss.expt.ClusterTokenBlocker
      • com.wcohen.ss.expt.NGramBlocker
        • com.wcohen.ss.expt.ClusterNGramBlocker
  • com.wcohen.ss.expt.Blocker.Pair (implements java.lang.Comparable<T>, com.wcohen.ss.api.DistanceInstance, java.io.Serializable)
  • com.wcohen.ss.tokens.CharacterTokenizer (implements com.wcohen.ss.api.Tokenizer)
  • com.wcohen.ss.CharMatchScore
  • com.wcohen.ss.CombinedStringDistanceLearner (implements com.wcohen.ss.api.StringDistanceLearner)
    • com.wcohen.ss.AveragedStringDistanceLearner
  • com.wcohen.ss.CombinedStringDistanceLearner.CombinedStringDistance (implements com.wcohen.ss.api.StringDistance)
  • com.wcohen.ss.CombinedStringDistanceLearner.JthDistanceInstanceIterator (implements com.wcohen.ss.api.DistanceInstanceIterator)
  • com.wcohen.ss.CombinedStringDistanceLearner.JthStringWrapperValueIterator (implements com.wcohen.ss.api.StringWrapperIterator)
  • com.wcohen.ss.CombinedStringDistanceLearner.MyDistanceInstance (implements com.wcohen.ss.api.DistanceInstance)
    • com.wcohen.ss.CombinedStringDistanceLearner.MyMultiDistanceInstance
  • com.wcohen.ss.DistanceLearnerFactory
  • com.wcohen.ss.expt.ExtractAbbreviations
  • com.wcohen.ss.expt.ExtractAbbreviations.Stats
  • com.wcohen.ss.expt.MatchData
  • com.wcohen.ss.expt.MatchData.MatchIterator (implements com.wcohen.ss.api.SourcedStringWrapperIterator)
  • com.wcohen.ss.expt.MatchExpt
  • com.wcohen.ss.expt.MatchExptScript
  • com.wcohen.ss.abbvGapsHmm.Matrix3D
  • com.wcohen.ss.MemoMatrix
    • com.wcohen.ss.AffineGap.MatrixTrio
    • com.wcohen.ss.AffineGap.MatrixTrio.InsertSMatrix
    • com.wcohen.ss.AffineGap.MatrixTrio.InsertTMatrix
    • com.wcohen.ss.ApproxMemoMatrix
  • com.wcohen.ss.MultiStringDistance (implements com.wcohen.ss.api.StringDistance)
    • com.wcohen.ss.MultiStringAvgDistance
  • com.wcohen.ss.tokens.NGramTokenizer (implements com.wcohen.ss.api.Tokenizer)
  • com.wcohen.ss.PrintfFormat
  • com.wcohen.ss.lookup.RescoringSoftTFIDFDictionary (implements com.wcohen.ss.lookup.FastLookup)
  • com.wcohen.ss.tokens.SimpleTokenizer (implements com.wcohen.ss.api.Tokenizer)
    • com.wcohen.ss.tokens.SimpleSourcedTokenizer (implements com.wcohen.ss.api.SourcedTokenizer)
  • com.wcohen.ss.lookup.SoftDictionary
  • com.wcohen.ss.lookup.SoftTFIDFDictionary (implements com.wcohen.ss.lookup.FastLookup)
  • com.wcohen.ss.expt.SourcedMatchData
  • com.wcohen.ss.expt.SourcedMatchData.MatchIterator (implements com.wcohen.ss.api.SourcedStringWrapperIterator)
  • com.wcohen.ss.expt.SpecialMatchExpt
  • com.wcohen.ss.api.StringDistanceTeacher
    • com.wcohen.ss.expt.BasicTeacher
    • com.wcohen.ss.expt.MatchDataTeacher
  • com.wcohen.ss.TagLink.Candidates
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • com.wcohen.ss.expt.MatchData.InputFormatException
        • com.wcohen.ss.expt.SourcedMatchData.InputFormatException

Interface Hierarchy

• com.wcohen.ss.api.DistanceInstance
• com.wcohen.ss.lookup.FastLookup
• java.util.Iterator<E>
  • com.wcohen.ss.api.DistanceInstanceIterator
  • com.wcohen.ss.api.SourcedStringWrapperIterator
  • com.wcohen.ss.api.StringWrapperIterator
    • com.wcohen.ss.api.SourcedStringWrapperIterator
• com.wcohen.ss.api.StringDistance
• com.wcohen.ss.api.StringDistanceLearner
• com.wcohen.ss.api.StringWrapper
  • com.wcohen.ss.api.IdentifiedStringWrapper
  • com.wcohen.ss.api.SourcedStringWrapper
• com.wcohen.ss.api.Token
  • com.wcohen.ss.api.SourcedToken
• com.wcohen.ss.api.Tokenizer
  • com.wcohen.ss.api.SourcedTokenizer

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM.States
    • com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM.Transitions
    • com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM.Emissions