Index (SecondString 0.1 API)

A B C D E F G H I J L M N O P R S T U V W _

A

a - Variable in class com.wcohen.ss.CombinedStringDistanceLearner.MyDistanceInstance
AbbreviationAlignment - Class in com.wcohen.ss: Abbreviation distance metric which evaluates the probability of a short-form string being an abbreviation/acronym of another long-form string.
AbbreviationAlignment() - Constructor for class com.wcohen.ss.AbbreviationAlignment
AbbreviationAlignmentContainer<T extends Enum<T>,S extends Enum<S>> - Class in com.wcohen.ss.abbvGapsHmm
AbbreviationsBlocker - Class in com.wcohen.ss.expt: Produces candidate pairs that share not-too-common character tokens.
AbbreviationsBlocker(Tokenizer, double) - Constructor for class com.wcohen.ss.expt.AbbreviationsBlocker
AbbreviationsBlocker() - Constructor for class com.wcohen.ss.expt.AbbreviationsBlocker
AbbvGapsHMM - Class in com.wcohen.ss.abbvGapsHmm
AbbvGapsHMM() - Constructor for class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
AbbvGapsHMM(String) - Constructor for class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
AbbvGapsHMM(String, boolean) - Constructor for class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
AbbvGapsHMM.Emissions - Enum in com.wcohen.ss.abbvGapsHmm
AbbvGapsHMM.States - Enum in com.wcohen.ss.abbvGapsHmm
AbbvGapsHMM.Transitions - Enum in com.wcohen.ss.abbvGapsHmm
AbbvGapsHmmBackwardsEvaluator - Class in com.wcohen.ss.abbvGapsHmm
AbbvGapsHmmBackwardsEvaluator(AbbvGapsHMM) - Constructor for class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator
AbbvGapsHmmBackwardsEvaluator.BackwardEvalParam - Class in com.wcohen.ss.abbvGapsHmm
AbbvGapsHmmBackwardsViterbiEvaluator - Class in com.wcohen.ss.abbvGapsHmm
AbbvGapsHmmBackwardsViterbiEvaluator(AbbvGapsHMM) - Constructor for class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
AbbvGapsHMMEvaluator - Class in com.wcohen.ss.abbvGapsHmm
AbbvGapsHMMEvaluator(AbbvGapsHMM) - Constructor for class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
AbbvGapsHMMEvaluator.EvalParam - Class in com.wcohen.ss.abbvGapsHmm
AbbvGapsHmmExpectationEvaluator - Class in com.wcohen.ss.abbvGapsHmm
AbbvGapsHmmExpectationEvaluator(AbbvGapsHMM) - Constructor for class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmExpectationEvaluator
AbbvGapsHmmForwardEvaluator - Class in com.wcohen.ss.abbvGapsHmm
AbbvGapsHmmForwardEvaluator(AbbvGapsHMM) - Constructor for class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator
AbbvGapsHmmForwardEvaluator.ForwardEvalParam - Class in com.wcohen.ss.abbvGapsHmm
AbstractSourcedStatisticalTokenDistance - Class in com.wcohen.ss: Abstract token distance metric that uses frequency statistics.
AbstractSourcedStatisticalTokenDistance(SourcedTokenizer) - Constructor for class com.wcohen.ss.AbstractSourcedStatisticalTokenDistance
AbstractSourcedStatisticalTokenDistance() - Constructor for class com.wcohen.ss.AbstractSourcedStatisticalTokenDistance
AbstractSourcedTokenizedStringDistance - Class in com.wcohen.ss: Abstract distance metric for tokenized strings.
AbstractSourcedTokenizedStringDistance(Tokenizer) - Constructor for class com.wcohen.ss.AbstractSourcedTokenizedStringDistance
AbstractSourcedTokenizedStringDistance() - Constructor for class com.wcohen.ss.AbstractSourcedTokenizedStringDistance
AbstractStatisticalTokenDistance - Class in com.wcohen.ss: Abstract token distance metric that uses frequency statistics.
AbstractStatisticalTokenDistance(Tokenizer) - Constructor for class com.wcohen.ss.AbstractStatisticalTokenDistance
AbstractStatisticalTokenDistance() - Constructor for class com.wcohen.ss.AbstractStatisticalTokenDistance
AbstractStringDistance - Class in com.wcohen.ss: Abstract class which implements StringDistanceLearner as well as StringDistance.
AbstractStringDistance() - Constructor for class com.wcohen.ss.AbstractStringDistance
AbstractTokenizedStringDistance - Class in com.wcohen.ss: Abstract distance metric for tokenized strings.
AbstractTokenizedStringDistance(Tokenizer) - Constructor for class com.wcohen.ss.AbstractTokenizedStringDistance
AbstractTokenizedStringDistance() - Constructor for class com.wcohen.ss.AbstractTokenizedStringDistance
Acronym - Class in com.wcohen.ss.abbvGapsHmm
Acronym(String, String) - Constructor for class com.wcohen.ss.abbvGapsHmm.Acronym
Acronym(String, String, Integer) - Constructor for class com.wcohen.ss.abbvGapsHmm.Acronym
Acronym.AcronymFrequencyComparator - Class in com.wcohen.ss.abbvGapsHmm
Acronym.AcronymShortFormComparator - Class in com.wcohen.ss.abbvGapsHmm
AcronymFrequencyComparator() - Constructor for class com.wcohen.ss.abbvGapsHmm.Acronym.AcronymFrequencyComparator
acronymsArrayToMap(Collection<Acronym>) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
AcronymShortFormComparator() - Constructor for class com.wcohen.ss.abbvGapsHmm.Acronym.AcronymShortFormComparator
add(int, int, int, double) - Method in class com.wcohen.ss.abbvGapsHmm.Matrix3D
addAbbreviationPairs(Map<String, Acronym>) - Method in class com.wcohen.ss.expt.ExtractAbbreviations
addCandidatePair(List<Acronym>, String, String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
addExample(DistanceInstance) - Method in class com.wcohen.ss.AbstractStringDistance: Implements StringDistanceLearner api by accepting new DistanceInstance labels.
addExample(DistanceInstance) - Method in interface com.wcohen.ss.api.StringDistanceLearner: Accept the answer to the last query.
addExample(DistanceInstance) - Method in class com.wcohen.ss.CombinedStringDistanceLearner: Pass new labels to the sublearners.
addInstance(String, String, String) - Method in class com.wcohen.ss.expt.MatchData: Add a single instance, with given src and id, to the datafile
addInstance(String, String, String) - Method in class com.wcohen.ss.expt.SourcedMatchData: Add a single instance, with given src and id, to the datafile
advanceEvalRange() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator.BackwardEvalParam
advanceEvalRange() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam: Advance within evaluation range
advanceEvalRange() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator.ForwardEvalParam
AffineGap - Class in com.wcohen.ss: Affine-gap string distance, following Durban et al.
AffineGap() - Constructor for class com.wcohen.ss.AffineGap
AffineGap(CharMatchScore, double, double, double) - Constructor for class com.wcohen.ss.AffineGap
AffineGap.MatrixTrio - Class in com.wcohen.ss
AffineGap.MatrixTrio.InsertSMatrix - Class in com.wcohen.ss
AffineGap.MatrixTrio.InsertTMatrix - Class in com.wcohen.ss
AlignmentPredictionModel - Class in com.wcohen.ss.abbvGapsHmm
AlignmentPredictionModel() - Constructor for class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
andToSymbolMatch(char) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
ApproxMemoMatrix - Class in com.wcohen.ss: Variant of MemoMatrix that only stores values near the diagonal, for better efficiency.
ApproxNeedlemanWunsch - Class in com.wcohen.ss: Needleman-Wunsch string distance, following Durban et al.
ApproxNeedlemanWunsch() - Constructor for class com.wcohen.ss.ApproxNeedlemanWunsch
ApproxNeedlemanWunsch(CharMatchScore, double) - Constructor for class com.wcohen.ss.ApproxNeedlemanWunsch
asBagOfSourcedTokens(SourcedStringWrapper) - Method in class com.wcohen.ss.AbstractSourcedTokenizedStringDistance
asBagOfTokens(StringWrapper) - Method in class com.wcohen.ss.AbstractTokenizedStringDistance
asMultiDistanceInstance(DistanceInstance) - Method in class com.wcohen.ss.CombinedStringDistanceLearner
asMultiDistanceInstanceList(DistanceInstanceIterator) - Method in class com.wcohen.ss.CombinedStringDistanceLearner
asMultiStringWrapper(StringWrapper) - Method in class com.wcohen.ss.CombinedStringDistanceLearner
asMultiStringWrapper(StringWrapper) - Method in class com.wcohen.ss.MultiStringDistance: Lazily prepare a string.
asMultiStringWrapperList(StringWrapperIterator) - Method in class com.wcohen.ss.CombinedStringDistanceLearner
asUnitVector(SourcedStringWrapper) - Method in class com.wcohen.ss.SourcedTFIDF
asUnitVector(StringWrapper) - Method in class com.wcohen.ss.TagLink
asUnitVector(StringWrapper) - Method in class com.wcohen.ss.TFIDF
at(int, int, int) - Method in class com.wcohen.ss.abbvGapsHmm.Matrix3D
AveragedStringDistanceLearner - Class in com.wcohen.ss: Abstract StringDistanceLearner class which averages results of a number of inner distance metrics, learned by a number of inner distance learners.
AveragedStringDistanceLearner() - Constructor for class com.wcohen.ss.AveragedStringDistanceLearner
AveragedStringDistanceLearner(StringDistanceLearner[], String) - Constructor for class com.wcohen.ss.AveragedStringDistanceLearner
averagePrecision() - Method in class com.wcohen.ss.expt.MatchExpt: non-interpolated average precision
averagePrecision() - Method in class com.wcohen.ss.expt.SpecialMatchExpt: non-interpolated average precision

B

b - Variable in class com.wcohen.ss.CombinedStringDistanceLearner.MyDistanceInstance
backgroundProb(Token) - Method in class com.wcohen.ss.JensenShannonDistance: Probability of token in the background language model
BackwardEvalParam(String) - Constructor for class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator.BackwardEvalParam
backwardEvaluate(Acronym, List<Double>, List<Double>) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator
backwardViterbiEvaluate(Acronym, List<Double>, List<Double>) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
BasicDistanceInstanceIterator - Class in com.wcohen.ss: A simple DistanceInstanceIterator implementation.
BasicDistanceInstanceIterator(Iterator) - Constructor for class com.wcohen.ss.BasicDistanceInstanceIterator
BasicSourcedStringWrapperIterator - Class in com.wcohen.ss: A simple StringWrapperIterator implementation.
BasicSourcedStringWrapperIterator(Iterator) - Constructor for class com.wcohen.ss.BasicSourcedStringWrapperIterator
BasicSourcedToken - Class in com.wcohen.ss.tokens: An interned version of a string, with provinance information
BasicStringWrapper - Class in com.wcohen.ss: An extendible (non-final) class that implements some of the functionality of a string.
BasicStringWrapper(String) - Constructor for class com.wcohen.ss.BasicStringWrapper
BasicStringWrapperIterator - Class in com.wcohen.ss: A simple StringWrapperIterator implementation.
BasicStringWrapperIterator(Iterator) - Constructor for class com.wcohen.ss.BasicStringWrapperIterator
BasicTeacher - Class in com.wcohen.ss.expt: Train a StringDistanceLearner.
BasicTeacher(Blocker, MatchData) - Constructor for class com.wcohen.ss.expt.BasicTeacher: Create a teacher from a blocker and a dataset.
BasicTeacher(StringWrapperIterator, DistanceInstanceIterator, DistanceInstanceIterator) - Constructor for class com.wcohen.ss.expt.BasicTeacher: Create a teacher using specific values for the various iterators.
BasicToken - Class in com.wcohen.ss.tokens: An interned version of a string.
block(MatchData) - Method in class com.wcohen.ss.expt.AbbreviationsBlocker
block(MatchData) - Method in class com.wcohen.ss.expt.Blocker: Load matchdata and prepare it for production of candidate pairs.
block(MatchData) - Method in class com.wcohen.ss.expt.NullBlocker
block(MatchData) - Method in class com.wcohen.ss.expt.TokenBlocker
Blocker - Class in com.wcohen.ss.expt: Produces candidate pairs from a MatchData structure, and provides access to those candidate pairs.
Blocker() - Constructor for class com.wcohen.ss.expt.Blocker
blocker(String) - Method in class com.wcohen.ss.expt.MatchExptScript: Load a blocker.
blocker(String, String, String) - Method in class com.wcohen.ss.expt.MatchExptScript: Load a blocker, with optional boolean value
Blocker.Pair - Class in com.wcohen.ss.expt: Holds a pair of instances, with mutable distance between them.
BLOCKER_PACKAGE - Static variable in class com.wcohen.ss.expt.MatchExpt
BLOCKER_PACKAGE - Static variable in class com.wcohen.ss.expt.MatchExptScript
BLOCKER_PACKAGE - Static variable in class com.wcohen.ss.expt.SpecialMatchExpt
blockerRecall() - Method in class com.wcohen.ss.expt.MatchExpt: performance of the blocker
blockerRecall() - Method in class com.wcohen.ss.expt.SpecialMatchExpt: performance of the blocker
build(String) - Static method in class com.wcohen.ss.DistanceLearnerFactory: Generate a StringDistance from a class name, or a sequence of classnames separated by slashes.
build(String[]) - Static method in class com.wcohen.ss.DistanceLearnerFactory: Generate a StringDistance from a sequence of classnames.
buildArray(String) - Static method in class com.wcohen.ss.DistanceLearnerFactory: Generate a StringDistanceArray given a sequence of classnames separated by slashes.

C

Candidates(int, int, double) - Constructor for class com.wcohen.ss.TagLink.Candidates: Candidates constructor.
cellFormat - Variable in class com.wcohen.ss.MemoMatrix
CharacterTokenizer - Class in com.wcohen.ss.tokens: Character tokenizer implementation.
CharacterTokenizer(boolean, boolean) - Constructor for class com.wcohen.ss.tokens.CharacterTokenizer
charAt(int) - Method in interface com.wcohen.ss.api.StringWrapper: Return the i-th char of the wrapped string
charAt(int) - Method in class com.wcohen.ss.BasicStringWrapper
charEqualIgnoreCase(char, char) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
CharMatchScore - Class in com.wcohen.ss: Abstract distance between characters.
CharMatchScore() - Constructor for class com.wcohen.ss.CharMatchScore
checkTrainingHasHappened(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.AbstractSourcedStatisticalTokenDistance
checkTrainingHasHappened(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.AbstractStatisticalTokenDistance
chunkLongForm(String, int) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
clear(String) - Method in class com.wcohen.ss.expt.MatchExptScript: Clear datasets, blockers, or learners.
clusterMode - Variable in class com.wcohen.ss.expt.Blocker
ClusterNGramBlocker - Class in com.wcohen.ss.expt: TokenBlocker for clustering based on NGram co-occurence.
ClusterNGramBlocker() - Constructor for class com.wcohen.ss.expt.ClusterNGramBlocker
ClusterTokenBlocker - Class in com.wcohen.ss.expt: TokenBlocker for clustering.
ClusterTokenBlocker() - Constructor for class com.wcohen.ss.expt.ClusterTokenBlocker
ClusterTokenBlocker(Tokenizer, double) - Constructor for class com.wcohen.ss.expt.ClusterTokenBlocker
collectionSize - Variable in class com.wcohen.ss.AbstractSourcedStatisticalTokenDistance
collectionSize - Variable in class com.wcohen.ss.AbstractStatisticalTokenDistance
com.wcohen.ss - package com.wcohen.ss: This package contains a bunch of approximate string comparators, plus code for performing controlled experiments with this.
com.wcohen.ss.abbvGapsHmm - package com.wcohen.ss.abbvGapsHmm
com.wcohen.ss.api - package com.wcohen.ss.api
com.wcohen.ss.expt - package com.wcohen.ss.expt
com.wcohen.ss.lookup - package com.wcohen.ss.lookup
com.wcohen.ss.tokens - package com.wcohen.ss.tokens
CombinedStringDistance(StringDistance[], MultiStringWrapper) - Constructor for class com.wcohen.ss.CombinedStringDistanceLearner.CombinedStringDistance
CombinedStringDistanceLearner - Class in com.wcohen.ss: Abstract StringDistanceLearner class which combines results of a number of inner distance metrics, learned by a number of inner distance learners.
CombinedStringDistanceLearner() - Constructor for class com.wcohen.ss.CombinedStringDistanceLearner
CombinedStringDistanceLearner(StringDistanceLearner[], String) - Constructor for class com.wcohen.ss.CombinedStringDistanceLearner
CombinedStringDistanceLearner.CombinedStringDistance - Class in com.wcohen.ss: Abstract class for combining innerDistances's
CombinedStringDistanceLearner.JthDistanceInstanceIterator - Class in com.wcohen.ss: Iterate over the j-th field of MultiStringWrapper's in a DistanceInstance of MultiStringWrapper's
CombinedStringDistanceLearner.JthStringWrapperValueIterator - Class in com.wcohen.ss: Iterate over the j-th field of MultiStringWrapper
CombinedStringDistanceLearner.MyDistanceInstance - Class in com.wcohen.ss
CombinedStringDistanceLearner.MyMultiDistanceInstance - Class in com.wcohen.ss
comboAddExample(DistanceInstance) - Method in class com.wcohen.ss.AveragedStringDistanceLearner
comboAddExample(DistanceInstance) - Method in class com.wcohen.ss.CombinedStringDistanceLearner: Pass a labeled example to the score-combination learner.
comboHasNextQuery() - Method in class com.wcohen.ss.AveragedStringDistanceLearner
comboHasNextQuery() - Method in class com.wcohen.ss.CombinedStringDistanceLearner: Poll the routine that learns to combine inner distance scores to see if it wants to make more queries.
comboNextQuery() - Method in class com.wcohen.ss.AveragedStringDistanceLearner
comboNextQuery() - Method in class com.wcohen.ss.CombinedStringDistanceLearner: Get the next query from the score-combination learner.
comboSetDistanceInstancePool(Iterator) - Method in class com.wcohen.ss.AveragedStringDistanceLearner
comboSetDistanceInstancePool(Iterator) - Method in class com.wcohen.ss.CombinedStringDistanceLearner: Set up a pool of (possibly unlabeled) instance distances, for the learner to make queries from.
comboSetStringWrapperPool(Iterator) - Method in class com.wcohen.ss.AveragedStringDistanceLearner
comboSetStringWrapperPool(Iterator) - Method in class com.wcohen.ss.CombinedStringDistanceLearner: Pass an iterator over unlabeled string wrappers to the score-combination learner, just in case that's useful.
compare(Acronym, Acronym) - Method in class com.wcohen.ss.abbvGapsHmm.Acronym.AcronymFrequencyComparator
compare(Acronym, Acronym) - Method in class com.wcohen.ss.abbvGapsHmm.Acronym.AcronymShortFormComparator
compareTo(Acronym) - Method in class com.wcohen.ss.abbvGapsHmm.Acronym
compareTo(Object) - Method in class com.wcohen.ss.expt.Blocker.Pair
compareTo(Object) - Method in class com.wcohen.ss.tokens.BasicSourcedToken
compareTo(Object) - Method in class com.wcohen.ss.tokens.BasicToken
compute(int, int) - Method in class com.wcohen.ss.AffineGap.MatrixTrio
compute(int, int) - Method in class com.wcohen.ss.AffineGap.MatrixTrio.InsertSMatrix
compute(int, int) - Method in class com.wcohen.ss.AffineGap.MatrixTrio.InsertTMatrix
compute() - Method in class com.wcohen.ss.expt.MatchExptScript: Compute learners.
correct - Variable in class com.wcohen.ss.CombinedStringDistanceLearner.MyDistanceInstance
countCorrectPairs(MatchData) - Method in class com.wcohen.ss.expt.Blocker: Compute number of correct pairs betwn src1 and src2, where src2>src1

D

dataset(String) - Method in class com.wcohen.ss.expt.MatchExptScript: Load a dataset.
DEFAULT_SOURCED_TOKENIZER - Static variable in class com.wcohen.ss.tokens.SimpleSourcedTokenizer
DEFAULT_TOKENIZER - Static variable in class com.wcohen.ss.tokens.CharacterTokenizer
DEFAULT_TOKENIZER - Static variable in class com.wcohen.ss.tokens.NGramTokenizer
DEFAULT_TOKENIZER - Static variable in class com.wcohen.ss.tokens.SimpleTokenizer
delim - Variable in class com.wcohen.ss.CombinedStringDistanceLearner
dimension1() - Method in class com.wcohen.ss.abbvGapsHmm.Matrix3D
dimension2() - Method in class com.wcohen.ss.abbvGapsHmm.Matrix3D
dimension3() - Method in class com.wcohen.ss.abbvGapsHmm.Matrix3D
DirichletJS - Class in com.wcohen.ss: Jensen-Shannon distance of two unigram language models, smoothed using Dirichlet prior.
DirichletJS(Tokenizer, double) - Constructor for class com.wcohen.ss.DirichletJS
DirichletJS() - Constructor for class com.wcohen.ss.DirichletJS
displayResults(boolean, PrintStream) - Method in class com.wcohen.ss.expt.MatchExpt: Show results in a simple format.
displayResults(boolean, PrintStream) - Method in class com.wcohen.ss.expt.SpecialMatchExpt: Show results in a simple format.
DIST_01 - Static variable in class com.wcohen.ss.CharMatchScore: Scores match as 0, mismatch as -1.
DIST_21 - Static variable in class com.wcohen.ss.CharMatchScore: Scores match as +2, mismatch as -1.
distance - Variable in class com.wcohen.ss.CombinedStringDistanceLearner.MyDistanceInstance
distance(String) - Method in class com.wcohen.ss.expt.MatchExptScript: Load a distance learner.
DISTANCE_PACKAGE - Static variable in class com.wcohen.ss.expt.MatchExpt
DISTANCE_PACKAGE - Static variable in class com.wcohen.ss.expt.MatchExptScript
DISTANCE_PACKAGE - Static variable in class com.wcohen.ss.expt.SpecialMatchExpt
distanceExamplePool() - Method in class com.wcohen.ss.api.StringDistanceTeacher: A pool of unlabeled pairs of strings over which distances will be computed, to be used for supervised learning.
distanceExamplePool() - Method in class com.wcohen.ss.expt.BasicTeacher
distanceExamplePool() - Method in class com.wcohen.ss.expt.MatchDataTeacher
DistanceInstance - Interface in com.wcohen.ss.api: An 'instance' for a StringDistance, analogous to an 'instance' for a classification learner.
DistanceInstanceIterator - Interface in com.wcohen.ss.api: An iterator over DistanceInstance objects.
distanceInstancePool() - Method in class com.wcohen.ss.api.StringDistanceTeacher: A pool of unlabeled pairs of strings over which distances will be computed, to be used for active or semi-supervised learning.
distanceInstancePool() - Method in class com.wcohen.ss.expt.BasicTeacher
distanceInstancePool() - Method in class com.wcohen.ss.expt.MatchDataTeacher
DistanceLearnerFactory - Class in com.wcohen.ss: Creates distance metric learners from string descriptions.
DistanceLearnerFactory() - Constructor for class com.wcohen.ss.DistanceLearnerFactory
documentFrequency - Variable in class com.wcohen.ss.AbstractSourcedStatisticalTokenDistance
documentFrequency - Variable in class com.wcohen.ss.AbstractStatisticalTokenDistance
doMain(StringDistance, String[]) - Static method in class com.wcohen.ss.AbstractStringDistance: Default main routine for testing
doMain(StringDistance, String[]) - Static method in class com.wcohen.ss.MultiStringDistance: Default main routine for testing
doScore(MultiStringWrapper, MultiStringWrapper) - Method in class com.wcohen.ss.CombinedStringDistanceLearner.CombinedStringDistance: Produce a score, assuming ms and mt are the correct sizes, and fully prepared.
dumpResults(PrintStream) - Method in class com.wcohen.ss.expt.MatchExpt: Show results in an easily machine-readable format.
dumpResults(PrintStream) - Method in class com.wcohen.ss.expt.SpecialMatchExpt: Show results in an easily machine-readable format.

E

echo(String) - Method in class com.wcohen.ss.expt.MatchExptScript: Turn echoing of commands on/off.
eq(Matrix3D) - Method in class com.wcohen.ss.abbvGapsHmm.Matrix3D
equals(Object) - Method in class com.wcohen.ss.abbvGapsHmm.Acronym
equals(Object) - Method in class com.wcohen.ss.tokens.BasicSourcedToken
equals(Object) - Method in class com.wcohen.ss.tokens.BasicToken
EvalParam(String) - Constructor for class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
evaluate(Acronym) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator: This function enumerates the possible transitions and emissions in a hard coded way, in order to save running-time
expectationEvaluate(Acronym, List<Double>, List<Double>, List<Double>, List<Double>, Matrix3D, Matrix3D) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmExpectationEvaluator
expectationStep(Acronym, String) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
explainCombination(MultiStringWrapper, MultiStringWrapper) - Method in class com.wcohen.ss.CombinedStringDistanceLearner.CombinedStringDistance: Explain how the primitive scores were combined.
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.AbbreviationAlignment
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.AbstractStringDistance: This method needs to be implemented by subclasses.
explainScore(String, String) - Method in class com.wcohen.ss.AbstractStringDistance: Scores are explained by converting Strings to StringWrappers with the prepare function.
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.AffineGap
explainScore(StringWrapper, StringWrapper) - Method in interface com.wcohen.ss.api.StringDistance: Explain how the distance was computed.
explainScore(String, String) - Method in interface com.wcohen.ss.api.StringDistance: Explain how the distance was computed.
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.ApproxNeedlemanWunsch
explainScore(String, String) - Method in class com.wcohen.ss.CombinedStringDistanceLearner.CombinedStringDistance
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.CombinedStringDistanceLearner.CombinedStringDistance
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.Jaccard: Explain how the distance was computed.
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.Jaro
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.JensenShannonDistance
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.Level2: Explain how the distance was computed.
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.Mixture: Explain how the distance was computed.
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.MongeElkan: Version where distance which is possibly scaled to [0,1].
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.MultiStringDistance
explainScore(String, String) - Method in class com.wcohen.ss.MultiStringDistance: Scores are explained by converting Strings to StringWrappers with the prepare function.
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.NeedlemanWunsch
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.SmithWaterman
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.SoftTFIDF: Explain how the distance was computed.
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.SoftTokenFelligiSunter: Explain how the distance was computed.
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.SourcedSoftTFIDF: Explain how the distance was computed.
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.SourcedTFIDF: Explain how the distance was computed.
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.TagLink: explainStringMetric gives a brief explanation of how the stringMetric was computed.
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.TFIDF: Explain how the distance was computed.
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.TokenFelligiSunter: Explain how the distance was computed.
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.tokens.TagLinkToken: explainScore returns an explanation of how the string distance was computed.
explainScore(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.WinklerRescorer
explainScoreCombination(double[]) - Method in class com.wcohen.ss.MultiStringAvgDistance: Explain how to combine the scores for each primitive distance function on each field.
explainScoreCombination(double[]) - Method in class com.wcohen.ss.MultiStringDistance: Explain how to combine the scores for each primitive distance function on each field.
ExtractAbbreviations - Class in com.wcohen.ss.expt: Extracts abbreviation pairs (<short-form, long-form>) from text using an 'abbreviation distance metric' which evaluates the probability of a short-form string being an abbreviation/acronym of another long-form string.
ExtractAbbreviations(String, String, String, String) - Constructor for class com.wcohen.ss.expt.ExtractAbbreviations
ExtractAbbreviations.Stats - Class in com.wcohen.ss.expt
extractCandidatePairs(String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel: Candidates Extraction
extractHeadNounPattern_2Parts(String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
extractHeadNounPattern_3Parts(String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
extractPatternAcronyms(String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
extractSingleAcronyms(String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
extractTrailingNounPattern_2Parts(String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
extractTrailingNounPattern_3Parts(String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel

F

F1 - Variable in class com.wcohen.ss.expt.ExtractAbbreviations.Stats
FastLookup - Interface in com.wcohen.ss.lookup: Interface for SoftTFIDFDictionary and the rescoring variant of it.
finalizeEvalMat() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator
finalizeEvalMat() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
finalizeEvalMat() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator
findLastNonLetterOrDigit(String, int) - Static method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator
findMostProbablePathBackwards(Acronym) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
findNextNonLetterOrDigit(String, int) - Static method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator
FN - Variable in class com.wcohen.ss.expt.ExtractAbbreviations.Stats
ForwardEvalParam(String) - Constructor for class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator.ForwardEvalParam
forwardEvaluate(Acronym, List<Double>, List<Double>) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator
FP - Variable in class com.wcohen.ss.expt.ExtractAbbreviations.Stats
freeze() - Method in class com.wcohen.ss.lookup.SoftTFIDFDictionary: Make it impossible to add new values, but possible to perform lookups.

G

get(int) - Method in class com.wcohen.ss.CombinedStringDistanceLearner.MyMultiDistanceInstance
get(int) - Method in class com.wcohen.ss.MultiStringWrapper: Return the i-th field.
getA() - Method in interface com.wcohen.ss.api.DistanceInstance
getA() - Method in class com.wcohen.ss.CombinedStringDistanceLearner.MyDistanceInstance
getA(int) - Method in class com.wcohen.ss.CombinedStringDistanceLearner.MyMultiDistanceInstance
getA() - Method in class com.wcohen.ss.expt.Blocker.Pair
getAcronym() - Method in class com.wcohen.ss.abbvGapsHmm.AbbreviationAlignmentContainer
getAcronymScore() - Method in class com.wcohen.ss.abbvGapsHmm.AbbreviationAlignmentContainer
getAlignedChar(int, boolean) - Method in class com.wcohen.ss.ApproxNeedlemanWunsch: Find a character in the first string, s, that can be aligned with the i-th character in the second string, t.
getB() - Method in interface com.wcohen.ss.api.DistanceInstance
getB() - Method in class com.wcohen.ss.CombinedStringDistanceLearner.MyDistanceInstance
getB(int) - Method in class com.wcohen.ss.CombinedStringDistanceLearner.MyMultiDistanceInstance
getB() - Method in class com.wcohen.ss.expt.Blocker.Pair
getCollectionSize() - Method in class com.wcohen.ss.SourcedTFIDF
getCollectionSize() - Method in class com.wcohen.ss.TFIDF
getCurrentChars(String, int, int) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator
getCurrentChars(String, int, int) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator: Get characters from the string going backwards or forwards (depending on the implementing class), and according to the specifies length.
getCurrentChars(String, int, int) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator
getCurrentPartialWordLen() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator.BackwardEvalParam
getCurrentPartialWordLen() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
getCurrentPartialWordLen() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator.ForwardEvalParam
getCurrentPartialWordMatchPosition() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator.BackwardEvalParam
getCurrentPartialWordMatchPosition() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
getCurrentPartialWordMatchPosition() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator.ForwardEvalParam
getCurrentWord(String, int) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator
getCurrentWord(String, int) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator: Get the current long form word going backwards or forwards (depending on the implementing class).
getCurrentWord(String, int) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator
getDF(String) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
getDistance() - Method in class com.wcohen.ss.AbstractStringDistance: Implements the StringDistanceLearner api by return a StringDistance.
getDistance() - Method in interface com.wcohen.ss.api.DistanceInstance
getDistance() - Method in interface com.wcohen.ss.api.StringDistanceLearner: Return the learned distance.
getDistance() - Method in class com.wcohen.ss.AveragedStringDistanceLearner
getDistance() - Method in class com.wcohen.ss.CombinedStringDistanceLearner: Get the final string distance, which will be based on the distances learned by the inner learners, as well as the combination scheme learned by comboSetAnswer, comboTrain, and etc.
getDistance() - Method in class com.wcohen.ss.CombinedStringDistanceLearner.MyDistanceInstance
getDistance() - Method in class com.wcohen.ss.expt.Blocker.Pair
getDistance(int) - Method in class com.wcohen.ss.MultiStringAvgDistance
getDistance(int) - Method in class com.wcohen.ss.MultiStringDistance: Get the distance used for the i-th pair of fields
getDistanceLearnerIndex(int) - Method in class com.wcohen.ss.MultiStringWrapper: Return the index of the learner that will process internal field i
getDocumentFrequency(Token) - Method in class com.wcohen.ss.AbstractSourcedStatisticalTokenDistance
getDocumentFrequency(Token) - Method in class com.wcohen.ss.AbstractStatisticalTokenDistance
getDocumentFrequency(Token) - Method in class com.wcohen.ss.SourcedTFIDF: Get the document frequency of the token.
getDocumentFrequency(Token) - Method in class com.wcohen.ss.TFIDF: Get the document frequency of the token.
getEmissionCounters() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmExpectationEvaluator
getEmmisionParams() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
getEmmisions() - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
getEndedWord(String, int) - Static method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator: If pos is ending a word in str: returns this word.
getEvalMatrix() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
getEvalMatrixSize() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
getEvalStringPos() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
getFieldIndex(int) - Method in class com.wcohen.ss.MultiStringWrapper: Return the field i of the original string associated with internal field i
getFilename() - Method in class com.wcohen.ss.expt.MatchData
getFilename() - Method in class com.wcohen.ss.expt.SourcedMatchData
getId() - Method in interface com.wcohen.ss.api.IdentifiedStringWrapper
getId() - Method in class com.wcohen.ss.expt.MatchData.Instance
getId() - Method in class com.wcohen.ss.expt.SourcedMatchData.Instance
getIndex() - Method in interface com.wcohen.ss.api.Token
getIndex() - Method in class com.wcohen.ss.tokens.BasicToken
getInnerDistances() - Method in class com.wcohen.ss.CombinedStringDistanceLearner: Get an array of trained inner distances.
getInstance(String, int) - Method in class com.wcohen.ss.expt.MatchData: Get the j-th record for the named source.
getInstance(String, int) - Method in class com.wcohen.ss.expt.SourcedMatchData: Get the j-th record for the named source.
getIterator() - Method in class com.wcohen.ss.expt.MatchData
getIterator() - Method in class com.wcohen.ss.expt.SourcedMatchData
getLAlign() - Method in class com.wcohen.ss.abbvGapsHmm.AbbreviationAlignmentContainer
getLambda() - Method in class com.wcohen.ss.JelinekMercerJS
getLearnedDistance() - Method in class com.wcohen.ss.expt.SpecialMatchExpt
getLegalStringPos(int, String) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
getLookupTime() - Method in class com.wcohen.ss.lookup.SoftTFIDFDictionary: Get the time used in performing the lookup
getMatched() - Method in class com.wcohen.ss.tokens.TagLinkToken: getMatched return the number of matched character.
getMaxFraction() - Method in class com.wcohen.ss.expt.AbbreviationsBlocker
getMaxFraction() - Method in class com.wcohen.ss.expt.TokenBlocker
getMaxInvertedIndexSize() - Method in class com.wcohen.ss.lookup.SoftTFIDFDictionary
getMaxNGramSize() - Method in class com.wcohen.ss.expt.NGramBlocker
getMinNGramSize() - Method in class com.wcohen.ss.expt.NGramBlocker
getNewStateVal(double, double) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
getNumDeletionsInAcronym() - Method in class com.wcohen.ss.abbvGapsHmm.AbbreviationAlignmentContainer
getPair(int) - Method in class com.wcohen.ss.expt.AbbreviationsBlocker
getPair(int) - Method in class com.wcohen.ss.expt.Blocker: Get the i-th candidate pair, as produced from most recently block()-ed data
getPair(int) - Method in class com.wcohen.ss.expt.NullBlocker
getPair(int) - Method in class com.wcohen.ss.expt.TokenBlocker
getPartialEndedWord(String, int) - Static method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator: If pos is ending a word in str: returns this word.
getPartialStartedWord(String, int) - Static method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator: If pos is starting a new word in str, returns this word.
getPartialWordParam(String, int) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator
getPartialWordParam(String, int) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
getPartialWordParam(String, int) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator
getProbability() - Method in class com.wcohen.ss.abbvGapsHmm.AbbreviationAlignmentContainer
getPseudoCount() - Method in class com.wcohen.ss.DirichletJS
getRangeEnd() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
getRangeStart() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
getResult(int) - Method in interface com.wcohen.ss.lookup.FastLookup: Get the i'th string found by the last lookup
getResult(int) - Method in class com.wcohen.ss.lookup.RescoringSoftTFIDFDictionary
getResult(int) - Method in class com.wcohen.ss.lookup.SoftTFIDFDictionary: Get the i'th string found by the last lookup
getSAlign() - Method in class com.wcohen.ss.abbvGapsHmm.AbbreviationAlignmentContainer
getScore(int) - Method in interface com.wcohen.ss.lookup.FastLookup: Get the score of the i'th string found by the last lookup
getScore(int) - Method in class com.wcohen.ss.lookup.RescoringSoftTFIDFDictionary
getScore(int) - Method in class com.wcohen.ss.lookup.SoftTFIDFDictionary: Get the score of the i'th string found by the last lookup
getScore() - Method in class com.wcohen.ss.TagLink.Candidates: getScore, return the score or distance between strings T and U.
getSource() - Method in interface com.wcohen.ss.api.SourcedStringWrapper
getSource() - Method in interface com.wcohen.ss.api.SourcedToken
getSource(int) - Method in class com.wcohen.ss.expt.MatchData: Get string identifier for i-th source
getSource() - Method in class com.wcohen.ss.expt.MatchData.Instance
getSource(int) - Method in class com.wcohen.ss.expt.SourcedMatchData: Get string identifier for i-th source
getSource() - Method in class com.wcohen.ss.expt.SourcedMatchData.Instance
getSource() - Method in class com.wcohen.ss.tokens.BasicSourcedToken
getStartedWord(String, int) - Static method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator: If pos is starting a new word in str, returns this word.
getStrByEmission(String, T) - Method in class com.wcohen.ss.abbvGapsHmm.AbbreviationAlignmentContainer
getTeacher() - Method in class com.wcohen.ss.lookup.SoftDictionary: Return a teacher that can 'train' a distance metric from the information in the dictionary.
getTokenMatchThreshold() - Method in class com.wcohen.ss.SoftTFIDF
getTokenMatchThreshold() - Method in class com.wcohen.ss.SourcedSoftTFIDF
getTokens() - Method in class com.wcohen.ss.SourcedTFIDF: Access the tokens of the last prepare()-ed string.
getTokens() - Method in class com.wcohen.ss.TFIDF: Access the tokens of the last prepare()-ed string.
getTPos() - Method in class com.wcohen.ss.TagLink.Candidates: getTPos, return the position of string T.
getTr() - Method in class com.wcohen.ss.tokens.TagLinkToken: getTr return the contant value Gamma.
getTransitionCounters() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmExpectationEvaluator
getTransitionParams() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
getTransitions() - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
getUPos() - Method in class com.wcohen.ss.TagLink.Candidates: getUPos, return the position of string U.
getValue() - Method in interface com.wcohen.ss.api.Token
getValue(int) - Method in interface com.wcohen.ss.lookup.FastLookup: Get the value of the i'th string found by the last lookup
getValue(int) - Method in class com.wcohen.ss.lookup.RescoringSoftTFIDFDictionary
getValue(int) - Method in class com.wcohen.ss.lookup.SoftTFIDFDictionary: Get the value of the i'th string found by the last lookup
getValue() - Method in class com.wcohen.ss.tokens.BasicToken
getVocabularySize() - Method in class com.wcohen.ss.TFIDF
getWeight(Token) - Method in class com.wcohen.ss.SourcedTFIDF: Access the weight of a token in the vector created for the last prepare()-ed string.
getWeight(Token) - Method in class com.wcohen.ss.TFIDF: Access the weight of a token in the vector created for the last prepare()-ed string.
getWindowSize(int) - Method in class com.wcohen.ss.lookup.SoftTFIDFDictionary
graphPrecisionRecall(PrintStream) - Method in class com.wcohen.ss.expt.MatchExpt: Graph interpolated precision vs recall
graphPrecisionRecall(PrintStream) - Method in class com.wcohen.ss.expt.SpecialMatchExpt: Graph interpolated precision vs recall

H

hasAnswers() - Method in class com.wcohen.ss.api.StringDistanceTeacher: Return true if this teacher can answer more queries.
hasAnswers() - Method in class com.wcohen.ss.expt.BasicTeacher
hasAnswers() - Method in class com.wcohen.ss.expt.MatchDataTeacher
hashCode() - Method in class com.wcohen.ss.abbvGapsHmm.Acronym
hashCode() - Method in class com.wcohen.ss.BasicStringWrapper
hashCode() - Method in class com.wcohen.ss.tokens.BasicSourcedToken
hashCode() - Method in class com.wcohen.ss.tokens.BasicToken
hasNext() - Method in interface com.wcohen.ss.api.DistanceInstanceIterator
hasNext() - Method in interface com.wcohen.ss.api.StringWrapperIterator
hasNext() - Method in class com.wcohen.ss.BasicDistanceInstanceIterator
hasNext() - Method in class com.wcohen.ss.BasicSourcedStringWrapperIterator
hasNext() - Method in class com.wcohen.ss.BasicStringWrapperIterator
hasNext() - Method in class com.wcohen.ss.CombinedStringDistanceLearner.JthDistanceInstanceIterator
hasNext() - Method in class com.wcohen.ss.CombinedStringDistanceLearner.JthStringWrapperValueIterator
hasNext() - Method in class com.wcohen.ss.expt.MatchData.MatchIterator
hasNext() - Method in class com.wcohen.ss.expt.SourcedMatchData.MatchIterator
hasNextQuery() - Method in class com.wcohen.ss.AbstractStringDistance: Implements StringDistanceLearner api by informing a teacher if the learner has DistanceInstance queries.
hasNextQuery() - Method in interface com.wcohen.ss.api.StringDistanceLearner: Returns true if the learner has more queries to answer.
hasNextQuery() - Method in class com.wcohen.ss.CombinedStringDistanceLearner: See if someone has a query

I

IdentifiedStringWrapper - Interface in com.wcohen.ss.api
identity(int) - Static method in class com.wcohen.ss.abbvGapsHmm.Matrix3D
increaseCounter(AbbvGapsHMM.Emissions, double) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmExpectationEvaluator
increaseCounter(AbbvGapsHMM.Transitions, double) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmExpectationEvaluator
INCREASING_DISTANCE - Static variable in interface com.wcohen.ss.api.DistanceInstance
index - Variable in class com.wcohen.ss.tokens.BasicToken
init(String[]) - Static method in class com.wcohen.ss.AbbreviationAlignment
initEvalMat() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator
initEvalMat() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
initEvalMat() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
initEvalMat() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator
initEvalParams() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator
initEvalParams() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
initEvalParams() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator
initEvalRange() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator.BackwardEvalParam
initEvalRange() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam: Init evaluation range
initEvalRange() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator.ForwardEvalParam
initModelParamsAndCounters() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
initStartProbs() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM: Initialize the starting probabilities for each state (hard coded).
innerDistances - Variable in class com.wcohen.ss.CombinedStringDistanceLearner.CombinedStringDistance
innerDistanceString() - Method in class com.wcohen.ss.CombinedStringDistanceLearner.CombinedStringDistance: Help class for 'toString()' which produces a description of the distances being combined.
innerLearners - Variable in class com.wcohen.ss.CombinedStringDistanceLearner
InputFormatException(String, int, String) - Constructor for exception com.wcohen.ss.expt.MatchData.InputFormatException
InputFormatException(String, int, String) - Constructor for exception com.wcohen.ss.expt.SourcedMatchData.InputFormatException
InsertSMatrix(StringWrapper, StringWrapper) - Constructor for class com.wcohen.ss.AffineGap.MatrixTrio.InsertSMatrix
InsertTMatrix(StringWrapper, StringWrapper) - Constructor for class com.wcohen.ss.AffineGap.MatrixTrio.InsertTMatrix
Instance(String, String, String) - Constructor for class com.wcohen.ss.expt.MatchData.Instance
Instance(String, String, String) - Constructor for class com.wcohen.ss.expt.SourcedMatchData.Instance
intern(String) - Method in interface com.wcohen.ss.api.Tokenizer: Convert a given string into a token.
intern(String) - Method in class com.wcohen.ss.tokens.CharacterTokenizer
intern(String) - Method in class com.wcohen.ss.tokens.NGramTokenizer
intern(String) - Method in class com.wcohen.ss.tokens.SimpleTokenizer
interpolated11PointPrecision() - Method in class com.wcohen.ss.expt.MatchExpt: Return an array of interpolated precision at various different recall levels.
interpolated11PointPrecision() - Method in class com.wcohen.ss.expt.SpecialMatchExpt: Return an array of interpolated precision at various different recall levels.
interpolated11PointRecallLevels() - Static method in class com.wcohen.ss.expt.MatchExpt: Return recall levels associated with the precision levels returned by interpolated11PointPrecision.
interpolated11PointRecallLevels() - Static method in class com.wcohen.ss.expt.SpecialMatchExpt: Return recall levels associated with the precision levels returned by interpolated11PointPrecision.
is - Variable in class com.wcohen.ss.AffineGap.MatrixTrio
isAtRangeEnd() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
isAtRangeStart() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
isCorrect() - Method in interface com.wcohen.ss.api.DistanceInstance
isCorrect() - Method in class com.wcohen.ss.CombinedStringDistanceLearner.MyDistanceInstance
isCorrect() - Method in class com.wcohen.ss.expt.Blocker.Pair
isCurrentPartialWordMatchPositionAtWordStart() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator.BackwardEvalParam
isCurrentPartialWordMatchPositionAtWordStart() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
isCurrentPartialWordMatchPositionAtWordStart() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator.ForwardEvalParam
isInEvalRange() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator.BackwardEvalParam
isInEvalRange() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam: Is in evaluation range
isInEvalRange() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator.ForwardEvalParam
isInStringMatchingRange() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator.BackwardEvalParam
isInStringMatchingRange() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
isInStringMatchingRange() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator.ForwardEvalParam
isLegalMultiStringWrapperSize(int) - Method in class com.wcohen.ss.MultiStringDistance: Check if a string has a valid number of fields.
isShortForm(String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
isValidExpression(String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
isValidShortForm(String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
it - Variable in class com.wcohen.ss.AffineGap.MatrixTrio

J

Jaccard - Class in com.wcohen.ss: Jaccard distance implementation.
Jaccard(Tokenizer) - Constructor for class com.wcohen.ss.Jaccard
Jaccard() - Constructor for class com.wcohen.ss.Jaccard
Jaro - Class in com.wcohen.ss: Jaro distance metric.
Jaro() - Constructor for class com.wcohen.ss.Jaro
JaroTFIDF - Class in com.wcohen.ss: Soft TFIDF-based distance metric, extended to use "soft" token-matching with the Jaro distance metric.
JaroTFIDF() - Constructor for class com.wcohen.ss.JaroTFIDF
JaroWinkler - Class in com.wcohen.ss: Jaro distance metric, as extended by Winkler.
JaroWinkler() - Constructor for class com.wcohen.ss.JaroWinkler
JaroWinklerTFIDF - Class in com.wcohen.ss: Soft TFIDF-based distance metric, extended to use "soft" token-matching with the JaroWinkler distance metric.
JaroWinklerTFIDF() - Constructor for class com.wcohen.ss.JaroWinklerTFIDF
JelinekMercerJS - Class in com.wcohen.ss: Jensen-Shannon distance of two unigram language models, smoothed using Jelinek-Mercer mixture model.
JelinekMercerJS(Tokenizer, double) - Constructor for class com.wcohen.ss.JelinekMercerJS
JelinekMercerJS() - Constructor for class com.wcohen.ss.JelinekMercerJS
JensenShannonDistance - Class in com.wcohen.ss: Distance metrics based on Jensen-Shannon distance of two smoothed unigram language models.
JensenShannonDistance(Tokenizer) - Constructor for class com.wcohen.ss.JensenShannonDistance
JensenShannonDistance() - Constructor for class com.wcohen.ss.JensenShannonDistance
JthDistanceInstanceIterator(int, Iterator) - Constructor for class com.wcohen.ss.CombinedStringDistanceLearner.JthDistanceInstanceIterator
JthStringWrapperValueIterator(int, Iterator) - Constructor for class com.wcohen.ss.CombinedStringDistanceLearner.JthStringWrapperValueIterator

L

labelInstance(DistanceInstance) - Method in class com.wcohen.ss.api.StringDistanceTeacher: Label an instance queried by the learner.
labelInstance(DistanceInstance) - Method in class com.wcohen.ss.expt.BasicTeacher
labelInstance(DistanceInstance) - Method in class com.wcohen.ss.expt.MatchDataTeacher
learner(String) - Method in class com.wcohen.ss.expt.MatchExptScript: Load a learner.
length() - Method in interface com.wcohen.ss.api.StringWrapper: Return the length of the wrapped string
length() - Method in class com.wcohen.ss.BasicStringWrapper
Level2 - Class in com.wcohen.ss: Generic version of Monge & Elkan's "level 2" recursive field matching.
Level2(Tokenizer, StringDistance) - Constructor for class com.wcohen.ss.Level2
Level2Jaro - Class in com.wcohen.ss: "Level 2" recursive field matching algorithm, based on Jaro distance.
Level2Jaro() - Constructor for class com.wcohen.ss.Level2Jaro
Level2JaroWinkler - Class in com.wcohen.ss: "Level 2" recursive field matching algorithm, based on Jaro distance.
Level2JaroWinkler() - Constructor for class com.wcohen.ss.Level2JaroWinkler
Level2Levenstein - Class in com.wcohen.ss: "Level 2" recursive field matching algorithm using Levenstein distance.
Level2Levenstein() - Constructor for class com.wcohen.ss.Level2Levenstein
Level2MongeElkan - Class in com.wcohen.ss: Monge & Elkan's "level 2" recursive field matching algorithm.
Level2MongeElkan() - Constructor for class com.wcohen.ss.Level2MongeElkan
Levenstein - Class in com.wcohen.ss: Levenstein string distance.
Levenstein() - Constructor for class com.wcohen.ss.Levenstein
load(File) - Method in class com.wcohen.ss.lookup.SoftDictionary: Insert all lines in a file as items mapping to themselves.
load(File, boolean) - Method in class com.wcohen.ss.lookup.SoftDictionary: Insert all lines in a file as items mapping to themselves.
loadAliases(File) - Method in class com.wcohen.ss.lookup.SoftDictionary: Load a file of identifiers, each of which has multiple aliases.
loadAliases(File) - Method in class com.wcohen.ss.lookup.SoftTFIDFDictionary: Load a file of identifiers, each of which has multiple aliases.
loadLabels(String) - Static method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
loadModelParams() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
loadPredictor() - Method in class com.wcohen.ss.AbbreviationAlignment
loadPredictor() - Method in class com.wcohen.ss.expt.ExtractAbbreviations
loadTrainingCorpus(String) - Static method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
lookup(double, String) - Method in interface com.wcohen.ss.lookup.FastLookup: Lookup items similar to 'toFind', and return the number of items found.
lookup(double, String) - Method in class com.wcohen.ss.lookup.RescoringSoftTFIDFDictionary
lookup(String, String) - Method in class com.wcohen.ss.lookup.SoftDictionary: Lookup a string in the dictionary.
lookup(String, StringWrapper) - Method in class com.wcohen.ss.lookup.SoftDictionary: Lookup a prepared string in the dictionary.
lookup(String) - Method in class com.wcohen.ss.lookup.SoftDictionary: Lookup a string in the dictionary.
lookup(StringWrapper) - Method in class com.wcohen.ss.lookup.SoftDictionary: Lookup a prepared string in the dictionary.
lookup(double, String) - Method in class com.wcohen.ss.lookup.SoftTFIDFDictionary: Lookup items SoftTFIDF-similar to the 'toFind' argument, and return the number of items found.
lookupDistance(String, String) - Method in class com.wcohen.ss.lookup.SoftDictionary: Return the distance to the best match.
lookupDistance(String, StringWrapper) - Method in class com.wcohen.ss.lookup.SoftDictionary: Return the distance to the best match.
lookupDistance(String) - Method in class com.wcohen.ss.lookup.SoftDictionary: Return the distance to the best match.
lookupDistance(StringWrapper) - Method in class com.wcohen.ss.lookup.SoftDictionary: Return the distance to the best match.
lookupTime - Variable in class com.wcohen.ss.lookup.SoftTFIDFDictionary

M

m - Variable in class com.wcohen.ss.AffineGap.MatrixTrio
main(String[]) - Static method in class com.wcohen.ss.AbbreviationAlignment: Evaluates the probability of the short-form string (string1) being an abbreviation/acronym of the long-form string (string2).
Usage: AbbreviationAlignment short_form_string long_form_string [train_data_dir]
main(String[]) - Static method in class com.wcohen.ss.AffineGap
main(String[]) - Static method in class com.wcohen.ss.ApproxNeedlemanWunsch
main(String[]) - Static method in class com.wcohen.ss.DirichletJS
main(String[]) - Static method in class com.wcohen.ss.DistanceLearnerFactory: Test routine.
main(String[]) - Static method in class com.wcohen.ss.expt.ExtractAbbreviations: Extracts abbreviation pairs from text.

Usage: ExtractAbbreviations input experiment_name [gold-file] [train-dir]
main(String[]) - Static method in class com.wcohen.ss.expt.MatchData
main(String[]) - Static method in class com.wcohen.ss.expt.MatchExpt: Command-line interface.
main(String[]) - Static method in class com.wcohen.ss.expt.MatchExptScript
main(String[]) - Static method in class com.wcohen.ss.expt.SourcedMatchData
main(String[]) - Static method in class com.wcohen.ss.expt.SpecialMatchExpt: Command-line interface.
main(String[]) - Static method in class com.wcohen.ss.Jaccard
main(String[]) - Static method in class com.wcohen.ss.Jaro
main(String[]) - Static method in class com.wcohen.ss.JaroTFIDF
main(String[]) - Static method in class com.wcohen.ss.JaroWinkler
main(String[]) - Static method in class com.wcohen.ss.JaroWinklerTFIDF
main(String[]) - Static method in class com.wcohen.ss.JelinekMercerJS
main(String[]) - Static method in class com.wcohen.ss.Level2
main(String[]) - Static method in class com.wcohen.ss.Level2Jaro
main(String[]) - Static method in class com.wcohen.ss.Level2JaroWinkler
main(String[]) - Static method in class com.wcohen.ss.Level2Levenstein
main(String[]) - Static method in class com.wcohen.ss.Level2MongeElkan
main(String[]) - Static method in class com.wcohen.ss.Levenstein
main(String[]) - Static method in class com.wcohen.ss.lookup.SoftDictionary: Simple main for testing.
main(String[]) - Static method in class com.wcohen.ss.lookup.SoftTFIDFDictionary: Simple main for testing and experimentation
main(String[]) - Static method in class com.wcohen.ss.Mixture
main(String[]) - Static method in class com.wcohen.ss.MongeElkan
main(String[]) - Static method in class com.wcohen.ss.MongeElkanTFIDF
main(String[]) - Static method in class com.wcohen.ss.MultiStringAvgDistance
main(String[]) - Static method in class com.wcohen.ss.MultiStringWrapper
main(String[]) - Static method in class com.wcohen.ss.NeedlemanWunsch
main(String[]) - Static method in class com.wcohen.ss.ScaledLevenstein
main(String[]) - Static method in class com.wcohen.ss.SmithWaterman
main(String[]) - Static method in class com.wcohen.ss.SoftTokenFelligiSunter
main(String[]) - Static method in class com.wcohen.ss.SourcedTFIDF
main(String[]) - Static method in class com.wcohen.ss.TFIDF
main(String[]) - Static method in class com.wcohen.ss.TokenFelligiSunter
main(String[]) - Static method in class com.wcohen.ss.tokens.CharacterTokenizer: Test routine
main(String[]) - Static method in class com.wcohen.ss.tokens.NGramTokenizer: Test routine
main(String[]) - Static method in class com.wcohen.ss.tokens.SimpleSourcedTokenizer: Test routine
main(String[]) - Static method in class com.wcohen.ss.tokens.SimpleTokenizer: Test routine
main(String[]) - Static method in class com.wcohen.ss.UnsmoothedJS
MatchData - Class in com.wcohen.ss.expt: Holds data for evaluating a distance metric.
MatchData(String) - Constructor for class com.wcohen.ss.expt.MatchData: Read match data from a file.
MatchData() - Constructor for class com.wcohen.ss.expt.MatchData
MatchData.InputFormatException - Exception in com.wcohen.ss.expt: Signals an incorrectly formatted MatchData file.
MatchData.Instance - Class in com.wcohen.ss.expt: A single item (aka record, string, etc) to match against others.
MatchData.MatchIterator - Class in com.wcohen.ss.expt: Iterates over all stored StringWrappers
MatchDataTeacher - Class in com.wcohen.ss.expt: Train a StringDistanceLearner using MatchData and a Blocker.
MatchDataTeacher(MatchData, Blocker) - Constructor for class com.wcohen.ss.expt.MatchDataTeacher
MatchExpt - Class in com.wcohen.ss.expt: Perform a matching experiment using a data file, distance function and blocker.
MatchExpt(MatchData, StringDistanceLearner, Blocker) - Constructor for class com.wcohen.ss.expt.MatchExpt
MatchExpt(MatchData, StringDistanceLearner) - Constructor for class com.wcohen.ss.expt.MatchExpt
MatchExptScript - Class in com.wcohen.ss.expt: Perform a series of match experiments, specified by a script in an input file.
MatchExptScript() - Constructor for class com.wcohen.ss.expt.MatchExptScript
MatchIterator(MatchData) - Constructor for class com.wcohen.ss.expt.MatchData.MatchIterator
MatchIterator(SourcedMatchData) - Constructor for class com.wcohen.ss.expt.SourcedMatchData.MatchIterator
matchScore(char, char) - Method in class com.wcohen.ss.CharMatchScore
Matrix3D - Class in com.wcohen.ss.abbvGapsHmm: M-by-N-by-K matrix implementation.
Matrix3D(int, int, int) - Constructor for class com.wcohen.ss.abbvGapsHmm.Matrix3D
Matrix3D(double[][][]) - Constructor for class com.wcohen.ss.abbvGapsHmm.Matrix3D
MatrixTrio(StringWrapper, StringWrapper) - Constructor for class com.wcohen.ss.AffineGap.MatrixTrio
max3(double, double, double) - Static method in class com.wcohen.ss.MemoMatrix: Return max of three numbers.
max4(double, double, double, double) - Static method in class com.wcohen.ss.MemoMatrix: Return max of four numbers.
maxF1() - Method in class com.wcohen.ss.expt.MatchExpt: max F1 for any threshold
maxF1() - Method in class com.wcohen.ss.expt.SpecialMatchExpt: max F1 for any threshold
maximizationStep() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM: Returns the total change in model parameter values.
maximizationStepForEmissions() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
maximizationStepForTransitions() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
maxTokenIndex() - Method in interface com.wcohen.ss.api.Tokenizer: Return the higest index of any interned token
maxTokenIndex() - Method in class com.wcohen.ss.tokens.CharacterTokenizer
maxTokenIndex() - Method in class com.wcohen.ss.tokens.NGramTokenizer
maxTokenIndex() - Method in class com.wcohen.ss.tokens.SimpleTokenizer
MemoMatrix - Class in com.wcohen.ss: A matrix of doubles, defined recursively by the compute(i,j) method, that will not be recomputed more than necessary.
minus(Matrix3D) - Method in class com.wcohen.ss.abbvGapsHmm.Matrix3D
Mixture - Class in com.wcohen.ss: Mixture-based distance metric.
Mixture(Tokenizer) - Constructor for class com.wcohen.ss.Mixture
Mixture() - Constructor for class com.wcohen.ss.Mixture
mkdir(String) - Method in class com.wcohen.ss.expt.ExtractAbbreviations
MongeElkan - Class in com.wcohen.ss: The match method proposed by Monge and Elkan.
MongeElkan() - Constructor for class com.wcohen.ss.MongeElkan
MongeElkanTFIDF - Class in com.wcohen.ss: Soft TFIDF-based distance metric, extended to use "soft" token-matching with the MongeElkan distance metric.
MongeElkanTFIDF() - Constructor for class com.wcohen.ss.MongeElkanTFIDF
mul(int, int, int, double) - Method in class com.wcohen.ss.abbvGapsHmm.Matrix3D
MultiStringAvgDistance - Class in com.wcohen.ss: StringDistance defined over Strings that are broken into fields, with distance defined as the average distance between any field.
MultiStringAvgDistance(StringDistance, String) - Constructor for class com.wcohen.ss.MultiStringAvgDistance
MultiStringDistance - Class in com.wcohen.ss: Abstract class StringDistance defined over Strings that are broken into fields.
MultiStringDistance(String) - Constructor for class com.wcohen.ss.MultiStringDistance
MultiStringWrapper - Class in com.wcohen.ss: A StringWrapper that stores a version of the string that has been either (a) split into a number of distinct fields, or (b) duplicated k times, so that k different StringDistance's can preprocess it, of (b) both of the above.
MultiStringWrapper(String, String) - Constructor for class com.wcohen.ss.MultiStringWrapper: Create a MultiStringWrapper by splitting s into fields based on the given delimiter.
MultiStringWrapper(String, int) - Constructor for class com.wcohen.ss.MultiStringWrapper: Create a MultiStringWrapper by making k copies of s.
MultiStringWrapper(String, int, String) - Constructor for class com.wcohen.ss.MultiStringWrapper: Create a MultiStringWrapper by making k copies of each field of s.
MyDistanceInstance(StringWrapper, StringWrapper, boolean, double) - Constructor for class com.wcohen.ss.CombinedStringDistanceLearner.MyDistanceInstance
MyMultiDistanceInstance(StringWrapper, StringWrapper, boolean, double) - Constructor for class com.wcohen.ss.CombinedStringDistanceLearner.MyMultiDistanceInstance

N

NeedlemanWunsch - Class in com.wcohen.ss: Needleman-Wunsch string distance, following Durban et al.
NeedlemanWunsch() - Constructor for class com.wcohen.ss.NeedlemanWunsch
NeedlemanWunsch(CharMatchScore, double) - Constructor for class com.wcohen.ss.NeedlemanWunsch
next() - Method in interface com.wcohen.ss.api.DistanceInstanceIterator
next() - Method in interface com.wcohen.ss.api.StringWrapperIterator
next() - Method in class com.wcohen.ss.BasicDistanceInstanceIterator
next() - Method in class com.wcohen.ss.BasicSourcedStringWrapperIterator
next() - Method in class com.wcohen.ss.BasicStringWrapperIterator
next() - Method in class com.wcohen.ss.CombinedStringDistanceLearner.JthDistanceInstanceIterator
next() - Method in class com.wcohen.ss.CombinedStringDistanceLearner.JthStringWrapperValueIterator
next() - Method in class com.wcohen.ss.expt.MatchData.MatchIterator: Returns the next StringWrapper as an object.
next() - Method in class com.wcohen.ss.expt.SourcedMatchData.MatchIterator: Returns the next StringWrapper as an object.
nextDistanceInstance() - Method in interface com.wcohen.ss.api.DistanceInstanceIterator
nextDistanceInstance() - Method in class com.wcohen.ss.BasicDistanceInstanceIterator
nextDistanceInstance() - Method in class com.wcohen.ss.CombinedStringDistanceLearner.JthDistanceInstanceIterator
nextQuery() - Method in class com.wcohen.ss.AbstractStringDistance: Implements StringDistanceLearner api by querying for DistanceInstance labels.
nextQuery() - Method in interface com.wcohen.ss.api.StringDistanceLearner: Returns a DistanceInstance for which the learner would like a label.
nextQuery() - Method in class com.wcohen.ss.CombinedStringDistanceLearner: Get a next query from one of the sublearners
nextSourcedStringWrapper() - Method in interface com.wcohen.ss.api.SourcedStringWrapperIterator
nextSourcedStringWrapper() - Method in class com.wcohen.ss.BasicSourcedStringWrapperIterator
nextSourcedStringWrapper() - Method in class com.wcohen.ss.expt.MatchData.MatchIterator: Return the next StringWrapper.
nextSourcedStringWrapper() - Method in class com.wcohen.ss.expt.SourcedMatchData.MatchIterator: Return the next StringWrapper.
nextStringWrapper() - Method in interface com.wcohen.ss.api.StringWrapperIterator
nextStringWrapper() - Method in class com.wcohen.ss.BasicSourcedStringWrapperIterator
nextStringWrapper() - Method in class com.wcohen.ss.BasicStringWrapperIterator
nextStringWrapper() - Method in class com.wcohen.ss.CombinedStringDistanceLearner.JthStringWrapperValueIterator
nextStringWrapper() - Method in class com.wcohen.ss.expt.MatchData.MatchIterator: Return the next StringWrapper.
nextStringWrapper() - Method in class com.wcohen.ss.expt.SourcedMatchData.MatchIterator: Return the next StringWrapper.
NGramBlocker - Class in com.wcohen.ss.expt: Finds all pairs that share a not-too-common character n-gram.
NGramBlocker() - Constructor for class com.wcohen.ss.expt.NGramBlocker
NGramTokenizer - Class in com.wcohen.ss.tokens: Wraps another tokenizer, and adds all computes all ngrams of characters from a single token produced by the inner tokenizer.
NGramTokenizer(int, int, boolean, Tokenizer) - Constructor for class com.wcohen.ss.tokens.NGramTokenizer
NullBlocker - Class in com.wcohen.ss.expt: Inefficient exhausitive blocking algorithm.
NullBlocker() - Constructor for class com.wcohen.ss.expt.NullBlocker
numCorrectPairs() - Method in class com.wcohen.ss.expt.AbbreviationsBlocker
numCorrectPairs() - Method in class com.wcohen.ss.expt.Blocker: Return total number of correct pairs in the dataset.
numCorrectPairs() - Method in class com.wcohen.ss.expt.NullBlocker
numCorrectPairs() - Method in class com.wcohen.ss.expt.TokenBlocker
numInstances(String) - Method in class com.wcohen.ss.expt.MatchData: Number of records for source with given string id
numInstances(String) - Method in class com.wcohen.ss.expt.SourcedMatchData: Number of records for source with given string id
numSources() - Method in class com.wcohen.ss.expt.MatchData: Number of sources in data set
numSources() - Method in class com.wcohen.ss.expt.SourcedMatchData: Number of sources in data set

O

offset(int) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator.BackwardEvalParam
offset(int) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
offset(int) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator.ForwardEvalParam
outOfRange(int, int) - Method in class com.wcohen.ss.ApproxMemoMatrix
outputAbbvs(Map<String, Acronym>) - Method in class com.wcohen.ss.expt.ExtractAbbreviations
outputPairs(BufferedWriter) - Method in class com.wcohen.ss.expt.ExtractAbbreviations

P

Pair(MatchData.Instance, MatchData.Instance, boolean) - Constructor for class com.wcohen.ss.expt.Blocker.Pair
pairsPerSecond() - Method in class com.wcohen.ss.expt.MatchExpt: Return total time to process data, divided by the number of pairs
pairsPerSecond() - Method in class com.wcohen.ss.expt.SpecialMatchExpt: Return total time to process data, divided by the number of pairs
parseCandidate(String, String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
plus(Matrix3D) - Method in class com.wcohen.ss.abbvGapsHmm.Matrix3D
posIsAtWord(String, int) - Static method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
posIsAtWordEnd(String, int) - Static method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator
posIsAtWordStart(String, int) - Static method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
precision - Variable in class com.wcohen.ss.expt.ExtractAbbreviations.Stats
precisionRecall() - Method in class com.wcohen.ss.expt.MatchExptScript: Show interpolated 11-pt precision curves for each blocker/distance/dataset
predict(String, String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
predict(Acronym) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
predict(String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
predictAlignment(Acronym) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
predictAndTest(List<String>, List<Map<String, String>>) - Method in class com.wcohen.ss.expt.ExtractAbbreviations
predictAndTest(int, List<String>, List<Map<String, String>>, BufferedWriter) - Method in class com.wcohen.ss.expt.ExtractAbbreviations
prepare(StringWrapperIterator) - Method in class com.wcohen.ss.AbstractSourcedTokenizedStringDistance
prepare(String) - Method in class com.wcohen.ss.AbstractStringDistance: Default way to preprocess a string for distance computation.
prepare(StringWrapperIterator) - Method in class com.wcohen.ss.AbstractStringDistance: Implements StringDistanceLearner api by providing a way to prep a StringWrapperIterator for training.
prepare(DistanceInstanceIterator) - Method in class com.wcohen.ss.AbstractStringDistance: Implements StringDistanceLearner api by providing a way to prep a DistanceInstanceIterator for training.
prepare(StringWrapperIterator) - Method in class com.wcohen.ss.AbstractTokenizedStringDistance
prepare(String) - Method in interface com.wcohen.ss.api.StringDistance: Preprocess a string for distance computation
prepare(StringWrapperIterator) - Method in interface com.wcohen.ss.api.StringDistanceLearner: Preprocess a StringWrapperIterator for unsupervised training.
prepare(DistanceInstanceIterator) - Method in interface com.wcohen.ss.api.StringDistanceLearner: Preprocess a DistanceInstanceIterator for supervised training.
prepare(String) - Method in class com.wcohen.ss.CombinedStringDistanceLearner.CombinedStringDistance
prepare(StringWrapperIterator) - Method in class com.wcohen.ss.CombinedStringDistanceLearner: Prepare data for the sublearners.
prepare(DistanceInstanceIterator) - Method in class com.wcohen.ss.CombinedStringDistanceLearner: Prepare data for the learners.
prepare(String) - Method in class com.wcohen.ss.Jaccard: Preprocess a string by finding tokens.
prepare(String) - Method in class com.wcohen.ss.Jaro
prepare(String) - Method in class com.wcohen.ss.JensenShannonDistance: Preprocess a string by finding tokens and giving them weights W such that W is the smoothed probability of the token appearing in the document.
prepare(String) - Method in class com.wcohen.ss.lookup.SoftDictionary: Prepare a string for quicker lookup.
prepare(String) - Method in class com.wcohen.ss.MultiStringDistance: Prepare a string.
prepare(StringDistance[]) - Method in class com.wcohen.ss.MultiStringWrapper: Prepare each field with the appropriate distance
prepare(String) - Method in class com.wcohen.ss.SoftTokenFelligiSunter: Preprocess a string by finding tokens
prepare(String) - Method in class com.wcohen.ss.SourcedTFIDF: Preprocess a string by finding tokens and giving them TFIDF weights
prepare(String) - Method in class com.wcohen.ss.TagLink: Preprocess a string by finding tokens and giving them TFIDF weights
prepare(String) - Method in class com.wcohen.ss.TFIDF: Preprocess a string by finding tokens and giving them TFIDF weights
prepare(String) - Method in class com.wcohen.ss.TokenFelligiSunter: Preprocess a string by finding tokens and giving them appropriate weights
prepare(String) - Method in class com.wcohen.ss.WinklerRescorer
PrintfFormat - Class in com.wcohen.ss: PrintfFormat allows the formatting of an array of objects embedded within a string.
PrintfFormat(String) - Constructor for class com.wcohen.ss.PrintfFormat: Constructs an array of control specifications possibly preceded, separated, or followed by ordinary strings.
PrintfFormat(Locale, String) - Constructor for class com.wcohen.ss.PrintfFormat: Constructs an array of control specifications possibly preceded, separated, or followed by ordinary strings.
printNegativeValues - Variable in class com.wcohen.ss.MemoMatrix
prototype - Variable in class com.wcohen.ss.CombinedStringDistanceLearner.CombinedStringDistance
put(String, String, Object) - Method in class com.wcohen.ss.lookup.SoftDictionary: Insert a string into the dictionary.
put(String, Object) - Method in class com.wcohen.ss.lookup.SoftDictionary: Insert a string into the dictionary.
put(String, StringWrapper, Object) - Method in class com.wcohen.ss.lookup.SoftDictionary: Insert a prepared string into the dictionary.
put(String, Object) - Method in class com.wcohen.ss.lookup.SoftTFIDFDictionary: Insert a string into the dictionary, and associate it with the given value.

R

random(int, int, int) - Static method in class com.wcohen.ss.abbvGapsHmm.Matrix3D
recall - Variable in class com.wcohen.ss.expt.ExtractAbbreviations.Stats
refreeze() - Method in class com.wcohen.ss.lookup.SoftTFIDFDictionary
remove() - Method in class com.wcohen.ss.BasicDistanceInstanceIterator
remove() - Method in class com.wcohen.ss.BasicSourcedStringWrapperIterator
remove() - Method in class com.wcohen.ss.BasicStringWrapperIterator
remove() - Method in class com.wcohen.ss.CombinedStringDistanceLearner.JthDistanceInstanceIterator
remove() - Method in class com.wcohen.ss.CombinedStringDistanceLearner.JthStringWrapperValueIterator
remove() - Method in class com.wcohen.ss.expt.MatchData.MatchIterator: Not implemented.
remove() - Method in class com.wcohen.ss.expt.SourcedMatchData.MatchIterator: Not implemented.
RescoringSoftTFIDFDictionary - Class in com.wcohen.ss.lookup: Wrapper around a SoftTFIDFDictionary that allows you to 'rescore' the result using an arbitrary StringDistance.
RescoringSoftTFIDFDictionary(FastLookup, double, StringDistance) - Constructor for class com.wcohen.ss.lookup.RescoringSoftTFIDFDictionary
restore(String) - Method in class com.wcohen.ss.expt.MatchExptScript: Restore experimental data previously 'saved' toa file.
restore(File) - Static method in class com.wcohen.ss.lookup.SoftTFIDFDictionary
retrunBestStates() - Method in class com.wcohen.ss.abbvGapsHmm.AbbreviationAlignmentContainer
run() - Method in class com.wcohen.ss.expt.ExtractAbbreviations
runScript(String) - Method in class com.wcohen.ss.expt.MatchExptScript: Load commands from a file and execute them.

S

s - Variable in class com.wcohen.ss.MemoMatrix
sameId(MatchData.Instance) - Method in class com.wcohen.ss.expt.MatchData.Instance
sameId(SourcedMatchData.Instance) - Method in class com.wcohen.ss.expt.SourcedMatchData.Instance
sAt(int) - Method in class com.wcohen.ss.MemoMatrix: Get i-th char of s, indexing s from 1..n
save(String) - Method in class com.wcohen.ss.expt.MatchExptScript: Save current experimental data to a file
saveAs(File) - Method in class com.wcohen.ss.lookup.SoftTFIDFDictionary
saveModelParams() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
ScaledLevenstein - Class in com.wcohen.ss: Levenstein string distance.
ScaledLevenstein() - Constructor for class com.wcohen.ss.ScaledLevenstein
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.AbbreviationAlignment
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.AbstractStringDistance: This method needs to be implemented by subclasses.
score(String, String) - Method in class com.wcohen.ss.AbstractStringDistance: Strings are scored by converting them to StringWrappers with the prepare function.
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.AffineGap
score(StringWrapper, StringWrapper) - Method in interface com.wcohen.ss.api.StringDistance: Find the distance between s and t.
score(String, String) - Method in interface com.wcohen.ss.api.StringDistance: Find the distance between s and t
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.ApproxNeedlemanWunsch
score(String, String) - Method in class com.wcohen.ss.CombinedStringDistanceLearner.CombinedStringDistance
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.CombinedStringDistanceLearner.CombinedStringDistance
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.Jaccard
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.Jaro
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.JensenShannonDistance: Jensen-Shannon distance between distributions.
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.Level2
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.Mixture: Distance is argmax_lambda prod_{w in s} lambda Pr(w|t) * (1-lambda) Pr(w|background).
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.MongeElkan: Version of distance which is possibly scaled to [0,1].
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.MultiStringDistance
score(String, String) - Method in class com.wcohen.ss.MultiStringDistance: Strings are scored by converting them to StringWrappers with the prepare function.
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.NeedlemanWunsch
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.ScaledLevenstein
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.SmithWaterman
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.SoftTFIDF
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.SoftTokenFelligiSunter
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.SourcedSoftTFIDF
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.SourcedTFIDF
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.TagLink: getStringMetric computes the similarity between a pair of strings T and U.
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.TFIDF
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.TokenFelligiSunter
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.tokens.TagLinkToken: score return the a strng distance value between 0 and 1 of a pair of tokens.
score(StringWrapper, StringWrapper) - Method in class com.wcohen.ss.WinklerRescorer
scoreCombination(double[]) - Method in class com.wcohen.ss.MultiStringAvgDistance: Combine the scores for each primitive distance function on each field.
scoreCombination(double[]) - Method in class com.wcohen.ss.MultiStringDistance: Combine the scores for each primitive distance function on each field.
SEPARATOR - Static variable in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
SEPARATOR - Static variable in class com.wcohen.ss.expt.ExtractAbbreviations
set(int, int, int, double) - Method in class com.wcohen.ss.abbvGapsHmm.Matrix3D
set(int, StringWrapper) - Method in class com.wcohen.ss.MultiStringWrapper: Set the i-th field.
setClusterMode(boolean) - Method in class com.wcohen.ss.expt.Blocker: In clusterMode, consider pairings between instances from the same source.
setClusterMode(Boolean) - Method in class com.wcohen.ss.expt.Blocker
setCollectionSize(int) - Method in class com.wcohen.ss.SourcedTFIDF: Setting the collectionSize and alsoSet the size of the collection that this TFIDF measure was trained on to some value.
setCollectionSize(int) - Method in class com.wcohen.ss.TFIDF: Setting the collectionSize and alsoSet the size of the collection that this TFIDF measure was trained on to some value.
setDistance(double) - Method in interface com.wcohen.ss.api.DistanceInstance
setDistance(double) - Method in class com.wcohen.ss.CombinedStringDistanceLearner.MyDistanceInstance
setDistance(double) - Method in class com.wcohen.ss.expt.Blocker.Pair
setDistanceInstancePool(DistanceInstanceIterator) - Method in class com.wcohen.ss.AbstractStringDistance: Implements StringDistanceLearner api by providing a way to accept a pool of unlabeled DistanceInstance's.
setDistanceInstancePool(DistanceInstanceIterator) - Method in interface com.wcohen.ss.api.StringDistanceLearner: Accept a set of unlabeled DistanceInstance, to use in making distance instance queries.
setDistanceInstancePool(DistanceInstanceIterator) - Method in class com.wcohen.ss.CombinedStringDistanceLearner: Pass the training data along to the inner learners.
setDocumentFrequency(Token, int) - Method in class com.wcohen.ss.SourcedTFIDF: Set the document frequency of the token to some value.
setDocumentFrequency(Token, int) - Method in class com.wcohen.ss.TFIDF: Set the document frequency of the token to some value.
setIgnoreCase(boolean) - Method in class com.wcohen.ss.tokens.CharacterTokenizer
setIgnoreCase(boolean) - Method in class com.wcohen.ss.tokens.SimpleTokenizer
setIgnorePunctuation(boolean) - Method in class com.wcohen.ss.tokens.CharacterTokenizer
setIgnorePunctuation(boolean) - Method in class com.wcohen.ss.tokens.SimpleTokenizer
setLambda(double) - Method in class com.wcohen.ss.JelinekMercerJS
setLambda(Double) - Method in class com.wcohen.ss.JelinekMercerJS
setMaxFraction(double) - Method in class com.wcohen.ss.expt.AbbreviationsBlocker
setMaxFraction(double) - Method in class com.wcohen.ss.expt.TokenBlocker
setMaxInvertedIndexSize(int) - Method in class com.wcohen.ss.lookup.SoftTFIDFDictionary: Set the maximum size of an inverted index that will be followed.
setMaxNGramSize(int) - Method in class com.wcohen.ss.expt.NGramBlocker
setMinNGramSize(int) - Method in class com.wcohen.ss.expt.NGramBlocker
setMismatchFactor(double) - Method in class com.wcohen.ss.SoftTokenFelligiSunter
setMismatchFactor(Double) - Method in class com.wcohen.ss.SoftTokenFelligiSunter
setMismatchFactor(double) - Method in class com.wcohen.ss.TokenFelligiSunter
setMismatchFactor(Double) - Method in class com.wcohen.ss.TokenFelligiSunter
setModelParamsFile(String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
setModelParamsFile() - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
setParamFile(String) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
setPartialWord(String, boolean) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator.BackwardEvalParam
setPartialWord(String, boolean) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
setPartialWord(String, boolean) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator.ForwardEvalParam
setPseudoCount(double) - Method in class com.wcohen.ss.DirichletJS
setPseudoCount(Double) - Method in class com.wcohen.ss.DirichletJS
setScaling(boolean) - Method in class com.wcohen.ss.MongeElkan: If scaling is true, then distances are scaled to 0-1
setScaling(Double) - Method in class com.wcohen.ss.MongeElkan: For interfacing with reflection in MatchExptScript.
setStartingParams(List<Double>, List<Double>) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
setStartingParams(List<Double>, List<Double>) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
setStringWrapperPool(StringWrapperIterator) - Method in class com.wcohen.ss.AbstractSourcedTokenizedStringDistance
setStringWrapperPool(StringWrapperIterator) - Method in class com.wcohen.ss.AbstractStringDistance: Implements the StringDistanceLearner api, by providing a way to accumulate statistics for a set of related strings.
setStringWrapperPool(StringWrapperIterator) - Method in class com.wcohen.ss.AbstractTokenizedStringDistance
setStringWrapperPool(StringWrapperIterator) - Method in interface com.wcohen.ss.api.StringDistanceLearner: Unsupervised learning method that observes strings for which distance will be computed.
setStringWrapperPool(StringWrapperIterator) - Method in class com.wcohen.ss.CombinedStringDistanceLearner: Pass the training data along to the inner learners.
setTfIdfData(String) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
setTfIdfData(String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
setTokenCount(int) - Method in class com.wcohen.ss.TFIDF
setTokenMatchThreshold(double) - Method in class com.wcohen.ss.SoftTFIDF
setTokenMatchThreshold(Double) - Method in class com.wcohen.ss.SoftTFIDF
setTokenMatchThreshold(double) - Method in class com.wcohen.ss.SoftTokenFelligiSunter
setTokenMatchThreshold(Double) - Method in class com.wcohen.ss.SoftTokenFelligiSunter
setTokenMatchThreshold(double) - Method in class com.wcohen.ss.SourcedSoftTFIDF
setTokenMatchThreshold(Double) - Method in class com.wcohen.ss.SourcedSoftTFIDF
setTrainDir(String) - Method in class com.wcohen.ss.AbbreviationAlignment
setTrainDir(String) - Method in class com.wcohen.ss.expt.ExtractAbbreviations
setTrainingDataDir(String) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
setTreshold(double) - Method in class com.wcohen.ss.tokens.TagLinkToken: setTreshold set a new value to the constant Gamma.
setWidth(int) - Method in class com.wcohen.ss.ApproxNeedlemanWunsch
setWindowSize(int) - Method in class com.wcohen.ss.lookup.SoftTFIDFDictionary: Set the 'windowSize' used for finding similar tokens.
show(String) - Method in class com.wcohen.ss.expt.MatchExptScript: Show datasets, blockers, or learners.
SimpleSourcedTokenizer - Class in com.wcohen.ss.tokens: Simple implementation of a Tokenizer.
SimpleSourcedTokenizer(boolean, boolean) - Constructor for class com.wcohen.ss.tokens.SimpleSourcedTokenizer
SimpleTokenizer - Class in com.wcohen.ss.tokens: Simple implementation of a Tokenizer.
SimpleTokenizer(boolean, boolean) - Constructor for class com.wcohen.ss.tokens.SimpleTokenizer
size() - Method in class com.wcohen.ss.expt.AbbreviationsBlocker
size() - Method in class com.wcohen.ss.expt.Blocker: Return number of candidate pairs, as produced from most recently block()-ed data
size() - Method in class com.wcohen.ss.expt.NullBlocker
size() - Method in class com.wcohen.ss.expt.TokenBlocker
size() - Method in class com.wcohen.ss.lookup.SoftDictionary: Return the number of entries in the dictionary.
size() - Method in class com.wcohen.ss.MultiStringWrapper: Return number of fields.
slowLookup(double, String) - Method in class com.wcohen.ss.lookup.SoftTFIDFDictionary: Exactly like lookup, but works by exhaustively checking every stored string.
SmithWaterman - Class in com.wcohen.ss: Smith-Waterman string distance, following Durban et al.
SmithWaterman() - Constructor for class com.wcohen.ss.SmithWaterman
SmithWaterman(CharMatchScore, double) - Constructor for class com.wcohen.ss.SmithWaterman
smoothCounter(int, List<Double>, List<Double>) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM: Dirichlet smoothing ------------------- Without a prior: P(data | theta) = theta(i)^beta(i) = counters(i) With a dirichlet prior: P(data | theta)*p(theta) = theta(i)^(beta(i) + alpha(i)) = theta(i)^beta(i) + theta(i)^alpha(i) counters(i) + params(i)^alpha(i)
smoothedProbability(Token, double, double) - Method in class com.wcohen.ss.DirichletJS: smoothed probability of the token
smoothedProbability(Token, double, double) - Method in class com.wcohen.ss.JelinekMercerJS: smoothed probability of the token
smoothedProbability(Token, double, double) - Method in class com.wcohen.ss.JensenShannonDistance: Smoothed probability of the token with frequency freq in a bag with the given totalWeight
smoothedProbability(Token, double, double) - Method in class com.wcohen.ss.UnsmoothedJS: Unsmoothed probability of the token
SoftDictionary - Class in com.wcohen.ss.lookup: Looks up nearly-matching strings in a dictionary, using a string distance.
SoftDictionary() - Constructor for class com.wcohen.ss.lookup.SoftDictionary
SoftDictionary(StringDistanceLearner) - Constructor for class com.wcohen.ss.lookup.SoftDictionary
SoftDictionary(Tokenizer) - Constructor for class com.wcohen.ss.lookup.SoftDictionary
SoftDictionary(StringDistanceLearner, Tokenizer) - Constructor for class com.wcohen.ss.lookup.SoftDictionary
SoftTFIDF - Class in com.wcohen.ss: TFIDF-based distance metric, extended to use "soft" token-matching.
SoftTFIDF(Tokenizer, StringDistance, double) - Constructor for class com.wcohen.ss.SoftTFIDF
SoftTFIDF(StringDistance, double) - Constructor for class com.wcohen.ss.SoftTFIDF
SoftTFIDF(StringDistance) - Constructor for class com.wcohen.ss.SoftTFIDF
SoftTFIDF() - Constructor for class com.wcohen.ss.SoftTFIDF
SoftTFIDFDictionary - Class in com.wcohen.ss.lookup: Looks up nearly-matching strings in a dictionary, using SoftTFIDF distance.
SoftTFIDFDictionary() - Constructor for class com.wcohen.ss.lookup.SoftTFIDFDictionary
SoftTFIDFDictionary(Tokenizer) - Constructor for class com.wcohen.ss.lookup.SoftTFIDFDictionary
SoftTFIDFDictionary(Tokenizer, double) - Constructor for class com.wcohen.ss.lookup.SoftTFIDFDictionary
SoftTFIDFDictionary(Tokenizer, double, int, int) - Constructor for class com.wcohen.ss.lookup.SoftTFIDFDictionary: Create a new SoftTFIDFDictionary.
SoftTokenFelligiSunter - Class in com.wcohen.ss: Highly simplified model of Felligi-Sunter's method 1, applied to tokens.
SoftTokenFelligiSunter(Tokenizer, StringDistance, double, double) - Constructor for class com.wcohen.ss.SoftTokenFelligiSunter
SoftTokenFelligiSunter() - Constructor for class com.wcohen.ss.SoftTokenFelligiSunter
SourcedMatchData - Class in com.wcohen.ss.expt: Holds data for evaluating a distance metric.
SourcedMatchData(String) - Constructor for class com.wcohen.ss.expt.SourcedMatchData: Read match data from a file.
SourcedMatchData() - Constructor for class com.wcohen.ss.expt.SourcedMatchData
SourcedMatchData.InputFormatException - Exception in com.wcohen.ss.expt: Signals an incorrectly formatted MatchData file.
SourcedMatchData.Instance - Class in com.wcohen.ss.expt: A single item (aka record, string, etc) to match against others.
SourcedMatchData.MatchIterator - Class in com.wcohen.ss.expt: Iterates over all stored StringWrappers
SourcedSoftTFIDF - Class in com.wcohen.ss: TFIDF-based distance metric, extended to use "soft" token-matching.
SourcedSoftTFIDF(SourcedTokenizer, StringDistance, double) - Constructor for class com.wcohen.ss.SourcedSoftTFIDF
SourcedSoftTFIDF(StringDistance, double) - Constructor for class com.wcohen.ss.SourcedSoftTFIDF
SourcedSoftTFIDF(StringDistance) - Constructor for class com.wcohen.ss.SourcedSoftTFIDF
SourcedSoftTFIDF() - Constructor for class com.wcohen.ss.SourcedSoftTFIDF
SourcedStringWrapper - Interface in com.wcohen.ss.api
SourcedStringWrapperIterator - Interface in com.wcohen.ss.api: An iterator over StringWrapper objects.
SourcedTFIDF - Class in com.wcohen.ss: Sourced-based distance metric.
SourcedTFIDF(SourcedTokenizer) - Constructor for class com.wcohen.ss.SourcedTFIDF
SourcedTFIDF() - Constructor for class com.wcohen.ss.SourcedTFIDF
SourcedTFIDF.UnitVector - Class in com.wcohen.ss: Marker class extending BagOfTokens
SourcedToken - Interface in com.wcohen.ss.api: An interned version of a string, with provinance information
sourcedTokenize(String, String) - Method in interface com.wcohen.ss.api.SourcedTokenizer: Return tokenized version of a string, as an array of SourcedToken objects.
sourcedTokenize(String, String) - Method in class com.wcohen.ss.tokens.SimpleSourcedTokenizer: Return tokenized version of a string.
SourcedTokenizer - Interface in com.wcohen.ss.api: Split a string into tokens, retaining provinance.
SpecialMatchExpt - Class in com.wcohen.ss.expt: Perform a matching experiment using a vocabulary stats file, data file, distance function and blocker.
SpecialMatchExpt(MatchData, StringDistanceLearner, Blocker, boolean, String, String, boolean) - Constructor for class com.wcohen.ss.expt.SpecialMatchExpt
sprintf(Object[]) - Method in class com.wcohen.ss.PrintfFormat: Format an array of objects.
sprintf() - Method in class com.wcohen.ss.PrintfFormat: Format nothing.
sprintf(int) - Method in class com.wcohen.ss.PrintfFormat: Format an int.
sprintf(long) - Method in class com.wcohen.ss.PrintfFormat: Format an long.
sprintf(double) - Method in class com.wcohen.ss.PrintfFormat: Format a double.
sprintf(String) - Method in class com.wcohen.ss.PrintfFormat: Format a String.
sprintf(Object) - Method in class com.wcohen.ss.PrintfFormat: Format an Object.
Stats() - Constructor for class com.wcohen.ss.expt.ExtractAbbreviations.Stats
StringDistance - Interface in com.wcohen.ss.api: Compute the difference between pairs of strings.
StringDistanceLearner - Interface in com.wcohen.ss.api: Learn a StringDistance.
StringDistanceTeacher - Class in com.wcohen.ss.api: Train a StringDistanceLearner and return the learned StringDistance, using some unspecified source of information to train the learner.
StringDistanceTeacher() - Constructor for class com.wcohen.ss.api.StringDistanceTeacher
StringWrapper - Interface in com.wcohen.ss.api: Something that implements some of the functionality of Java's string class, but which is a non-final class, and hence can also cache additional information to facilitate later processing.
stringWrapperIterator() - Method in class com.wcohen.ss.api.StringDistanceTeacher: Strings over which distances will be computed.
StringWrapperIterator - Interface in com.wcohen.ss.api: An iterator over StringWrapper objects.
stringWrapperIterator() - Method in class com.wcohen.ss.expt.BasicTeacher
stringWrapperIterator() - Method in class com.wcohen.ss.expt.MatchDataTeacher

T

t - Variable in class com.wcohen.ss.MemoMatrix
table(String) - Method in class com.wcohen.ss.expt.MatchExptScript: Show a table of some expt-wide numeric measurement.
TagLink - Class in com.wcohen.ss
TagLink() - Constructor for class com.wcohen.ss.TagLink: TagLink default constructor.
TagLink(AbstractStringDistance) - Constructor for class com.wcohen.ss.TagLink: TagLink constructor requires a character based string metric.
TagLink(Tokenizer, AbstractStringDistance) - Constructor for class com.wcohen.ss.TagLink: TagLink constructor requires a tokenizer and a tokenDistance metric
TagLink(String[]) - Constructor for class com.wcohen.ss.TagLink: TagLink constructor requires dataset string array in order to compute the IDF weights.
TagLink(String[], AbstractStringDistance) - Constructor for class com.wcohen.ss.TagLink: TagLink constructor requires dataset string array in order to compute the IDF weights and a tokenDistance metric.
TagLink.Candidates - Class in com.wcohen.ss
TagLink.UnitVector - Class in com.wcohen.ss: Marker class extending BagOfTokens
TagLinkToken - Class in com.wcohen.ss.tokens
TagLinkToken() - Constructor for class com.wcohen.ss.tokens.TagLinkToken: TagLinkToken default constructor.
TagLinkToken(double) - Constructor for class com.wcohen.ss.tokens.TagLinkToken: TagLinkToken constrctur.
tAt(int) - Method in class com.wcohen.ss.MemoMatrix: Get i-th char of t, indexing s from 1..n
TFIDF - Class in com.wcohen.ss: TFIDF-based distance metric.
TFIDF(Tokenizer) - Constructor for class com.wcohen.ss.TFIDF
TFIDF() - Constructor for class com.wcohen.ss.TFIDF
TFIDF.UnitVector - Class in com.wcohen.ss: Marker class extending BagOfTokens
time() - Method in class com.wcohen.ss.expt.MatchExpt: Return total time to process data.
time() - Method in class com.wcohen.ss.expt.SpecialMatchExpt: Return total time to process data.
times(double) - Method in class com.wcohen.ss.abbvGapsHmm.Matrix3D
TN - Variable in class com.wcohen.ss.expt.ExtractAbbreviations.Stats
Token - Interface in com.wcohen.ss.api: An interned version of a string.
TokenBlocker - Class in com.wcohen.ss.expt: Finds all pairs that share a not-too-common token.
TokenBlocker(Tokenizer, double) - Constructor for class com.wcohen.ss.expt.TokenBlocker
TokenBlocker() - Constructor for class com.wcohen.ss.expt.TokenBlocker
TokenFelligiSunter - Class in com.wcohen.ss: Highly simplified model of Felligi-Sunter's method 1, applied to tokens.
TokenFelligiSunter(Tokenizer, double) - Constructor for class com.wcohen.ss.TokenFelligiSunter
TokenFelligiSunter() - Constructor for class com.wcohen.ss.TokenFelligiSunter
tokenIterator() - Method in class com.wcohen.ss.AbstractStatisticalTokenDistance
tokenIterator() - Method in interface com.wcohen.ss.api.Tokenizer: Return an iterator over interned tokens
tokenIterator() - Method in class com.wcohen.ss.tokens.CharacterTokenizer
tokenIterator() - Method in class com.wcohen.ss.tokens.NGramTokenizer
tokenIterator() - Method in class com.wcohen.ss.tokens.SimpleTokenizer
tokenize(String) - Method in interface com.wcohen.ss.api.Tokenizer: Return tokenized version of a string
tokenize(String) - Method in class com.wcohen.ss.tokens.CharacterTokenizer: Return tokenized version of a string.
tokenize(String) - Method in class com.wcohen.ss.tokens.NGramTokenizer: Return tokenized version of a string.
tokenize(String) - Method in class com.wcohen.ss.tokens.SimpleTokenizer: Return tokenized version of a string.
tokenizer - Variable in class com.wcohen.ss.AbstractSourcedTokenizedStringDistance
tokenizer - Variable in class com.wcohen.ss.AbstractTokenizedStringDistance
Tokenizer - Interface in com.wcohen.ss.api: Split a string into tokens.
tokenizer - Variable in class com.wcohen.ss.expt.AbbreviationsBlocker
tokenizer - Variable in class com.wcohen.ss.expt.TokenBlocker
toString() - Method in class com.wcohen.ss.abbvGapsHmm.AbbreviationAlignmentContainer
toString() - Method in class com.wcohen.ss.abbvGapsHmm.Acronym
toString() - Method in class com.wcohen.ss.ApproxMemoMatrix: Print the matrix, for debugging and/or explanation.
toString() - Method in class com.wcohen.ss.BasicStringWrapper
toString() - Method in class com.wcohen.ss.CombinedStringDistanceLearner.MyMultiDistanceInstance
toString() - Method in class com.wcohen.ss.DirichletJS
toString() - Method in class com.wcohen.ss.expt.AbbreviationsBlocker
toString() - Method in class com.wcohen.ss.expt.Blocker.Pair
toString() - Method in class com.wcohen.ss.expt.ClusterNGramBlocker
toString() - Method in class com.wcohen.ss.expt.ClusterTokenBlocker
toString() - Method in class com.wcohen.ss.expt.MatchData.Instance
toString() - Method in class com.wcohen.ss.expt.MatchData
toString() - Method in class com.wcohen.ss.expt.MatchExpt
toString() - Method in class com.wcohen.ss.expt.NGramBlocker
toString() - Method in class com.wcohen.ss.expt.NullBlocker
toString() - Method in class com.wcohen.ss.expt.SourcedMatchData.Instance
toString() - Method in class com.wcohen.ss.expt.SourcedMatchData
toString() - Method in class com.wcohen.ss.expt.SpecialMatchExpt
toString() - Method in class com.wcohen.ss.expt.TokenBlocker
toString() - Method in class com.wcohen.ss.Jaccard
toString() - Method in class com.wcohen.ss.Jaro
toString() - Method in class com.wcohen.ss.JaroTFIDF
toString() - Method in class com.wcohen.ss.JaroWinklerTFIDF
toString() - Method in class com.wcohen.ss.JelinekMercerJS
toString() - Method in class com.wcohen.ss.Level2
toString() - Method in class com.wcohen.ss.Level2Jaro
toString() - Method in class com.wcohen.ss.Level2JaroWinkler
toString() - Method in class com.wcohen.ss.Level2Levenstein
toString() - Method in class com.wcohen.ss.Level2MongeElkan
toString() - Method in class com.wcohen.ss.Levenstein
toString() - Method in class com.wcohen.ss.MemoMatrix: Print the matrix, for debugging and/or explanation.
toString() - Method in class com.wcohen.ss.Mixture
toString() - Method in class com.wcohen.ss.MongeElkan
toString() - Method in class com.wcohen.ss.MongeElkanTFIDF
toString() - Method in class com.wcohen.ss.MultiStringWrapper
toString() - Method in class com.wcohen.ss.ScaledLevenstein
toString() - Method in class com.wcohen.ss.SmithWaterman
toString() - Method in class com.wcohen.ss.SoftTFIDF
toString() - Method in class com.wcohen.ss.SoftTokenFelligiSunter
toString() - Method in class com.wcohen.ss.SourcedSoftTFIDF
toString() - Method in class com.wcohen.ss.SourcedTFIDF
toString() - Method in class com.wcohen.ss.TagLink: toString returns the name and parameters of this string metric
toString() - Method in class com.wcohen.ss.TFIDF
toString() - Method in class com.wcohen.ss.TokenFelligiSunter
toString() - Method in class com.wcohen.ss.tokens.BasicSourcedToken
toString() - Method in class com.wcohen.ss.tokens.BasicToken
toString() - Method in class com.wcohen.ss.tokens.CharacterTokenizer
toString() - Method in class com.wcohen.ss.tokens.SimpleTokenizer
toString() - Method in class com.wcohen.ss.tokens.TagLinkToken: toString return the name of the string metric.
toString() - Method in class com.wcohen.ss.UnsmoothedJS
toString() - Method in class com.wcohen.ss.WinklerRescorer
toStringNoStates() - Method in class com.wcohen.ss.abbvGapsHmm.AbbreviationAlignmentContainer
toStringWithEmissions() - Method in class com.wcohen.ss.abbvGapsHmm.AbbreviationAlignmentContainer
toStringWithFrequency() - Method in class com.wcohen.ss.abbvGapsHmm.Acronym
toStringWithStates() - Method in class com.wcohen.ss.abbvGapsHmm.AbbreviationAlignmentContainer
totalTokenCount - Variable in class com.wcohen.ss.AbstractSourcedStatisticalTokenDistance
totalTokenCount - Variable in class com.wcohen.ss.AbstractStatisticalTokenDistance
TP - Variable in class com.wcohen.ss.expt.ExtractAbbreviations.Stats
train(List<List<Acronym>>, List<Map<String, String>>) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
train(List<List<Acronym>>, List<Map<String, String>>, boolean) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
train(List<String>, List<Integer>, List<Map<String, String>>) - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
train(StringWrapperIterator) - Method in class com.wcohen.ss.AbstractSourcedStatisticalTokenDistance: Accumulate statistics on how often each token value occurs
train(StringWrapperIterator) - Method in class com.wcohen.ss.AbstractSourcedTokenizedStringDistance
train(StringWrapperIterator) - Method in class com.wcohen.ss.AbstractStatisticalTokenDistance: Accumulate statistics on how often each token value occurs
train(StringWrapperIterator) - Method in class com.wcohen.ss.AbstractTokenizedStringDistance
train(StringDistanceLearner) - Method in class com.wcohen.ss.api.StringDistanceTeacher
train(StringWrapperIterator) - Method in class com.wcohen.ss.JensenShannonDistance: Accumulate statistics on how often each token occurs.
train(StringWrapperIterator) - Method in class com.wcohen.ss.Level2: Training is a null operation.
trainCorpus(List<List<Acronym>>, List<Map<String, String>>) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM
trainIfNeeded() - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
trainOnAll() - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
trainOnCandidates() - Method in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
transitionIsLegal(int, int, AbbvGapsHMM.States, int, int, AbbvGapsHMM.States, AbbvGapsHMM.Transitions, AbbvGapsHMM.Emissions) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator
transitionIsLegal(int, int, AbbvGapsHMM.States, int, int, AbbvGapsHMM.States, AbbvGapsHMM.Transitions, AbbvGapsHMM.Emissions) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
transitionIsLegal(int, int, AbbvGapsHMM.States, int, int, AbbvGapsHMM.States, AbbvGapsHMM.Transitions, AbbvGapsHMM.Emissions) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator

U

UnitVector(String, SourcedToken[]) - Constructor for class com.wcohen.ss.SourcedTFIDF.UnitVector
UnitVector(BagOfSourcedTokens) - Constructor for class com.wcohen.ss.SourcedTFIDF.UnitVector
UnitVector(String, Token[]) - Constructor for class com.wcohen.ss.TagLink.UnitVector
UnitVector(BagOfTokens) - Constructor for class com.wcohen.ss.TagLink.UnitVector
UnitVector(String, Token[]) - Constructor for class com.wcohen.ss.TFIDF.UnitVector
UnitVector(BagOfTokens) - Constructor for class com.wcohen.ss.TFIDF.UnitVector
UnsmoothedJS - Class in com.wcohen.ss: Jensen-Shannon distance of two unsmoothed unigram language models.
UnsmoothedJS() - Constructor for class com.wcohen.ss.UnsmoothedJS
unwrap() - Method in interface com.wcohen.ss.api.StringWrapper: Return the string that is wrapped.
unwrap() - Method in class com.wcohen.ss.BasicStringWrapper
updateLegalOutgoingEdges(int, int, AbbvGapsHMM.States, int, int, AbbvGapsHMM.States, AbbvGapsHMM.Transitions, AbbvGapsHMM.Emissions) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator
updateLegalOutgoingEdges(int, int, AbbvGapsHMM.States, int, int, AbbvGapsHMM.States, AbbvGapsHMM.Transitions, AbbvGapsHMM.Emissions) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
updateLegalOutgoingEdges(int, int, AbbvGapsHMM.States, int, int, AbbvGapsHMM.States, AbbvGapsHMM.Transitions, AbbvGapsHMM.Emissions) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
updateLegalOutgoingEdges(int, int, AbbvGapsHMM.States, int, int, AbbvGapsHMM.States, AbbvGapsHMM.Transitions, AbbvGapsHMM.Emissions) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmExpectationEvaluator
updateLegalOutgoingEdges(int, int, AbbvGapsHMM.States, int, int, AbbvGapsHMM.States, AbbvGapsHMM.Transitions, AbbvGapsHMM.Emissions) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator
updateOutgoingEdges(int, int, AbbvGapsHMM.States, int, int, AbbvGapsHMM.States, AbbvGapsHMM.Transitions, AbbvGapsHMM.Emissions) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
updateOutgoingEdgesStateD(int, int, int, int, AbbvGapsHMM.Emissions) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator: Enumerates the possible transitions into state D.
updateOutgoingEdgesStateDL(int, int, int, int, AbbvGapsHMM.Emissions) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator: Enumerates the possible transitions into state DL.
updateOutgoingEdgesStateEND(int, int, int, int, AbbvGapsHMM.Emissions) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator: Enumerates the possible transitions into state END.
updateOutgoingEdgesStateM(int, int, int, int, AbbvGapsHMM.Emissions) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator: Enumerates the possible transitions into state M.
updateState(AbbvGapsHMM.States, int, int, int, int, AbbvGapsHMM.Emissions) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
useTDIDF() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM

V

val() - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
value - Variable in class com.wcohen.ss.tokens.BasicToken
valueOf(String) - Static method in enum com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM.Emissions: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM.States: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM.Transitions: Returns the enum constant of this type with the specified name.
values() - Static method in enum com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM.Emissions: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM.States: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM.Transitions: Returns an array containing the constants of this enum type, in the order they are declared.
viterbi(Acronym) - Method in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM

W

WinklerRescorer - Class in com.wcohen.ss: Winkler's reweighting scheme for distance metrics.
WinklerRescorer(StringDistance) - Constructor for class com.wcohen.ss.WinklerRescorer: Rescore the innerDistance's scores, to account for the subjectively greater importance of the first few characters.

_

_acronym - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
_alignment - Variable in class com.wcohen.ss.abbvGapsHmm.Acronym
_alpha - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
_alpha - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmExpectationEvaluator
_bestProb - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
_beta - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
_beta - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmExpectationEvaluator
_current - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
_currentStringPos - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
_currPartialWord - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
_currProb - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
_currWord - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
_emissionCounters - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmExpectationEvaluator
_emissionParams - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator
_emissionParams - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator
_emissions - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
_eval_end - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
_eval_mat_size - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
_eval_start - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
_evalMat - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
_frequency - Variable in class com.wcohen.ss.abbvGapsHmm.Acronym
_gapsHMM - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
_length - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
_longForm - Variable in class com.wcohen.ss.abbvGapsHmm.Acronym
_lParam - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
_partialWord - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
_partialWordIsAtStart - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator.EvalParam
_partialWordParam - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
_prevLF - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
_prevLF_stringPos - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
_prevSF - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
_prevSF_stringPos - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
_probability - Variable in class com.wcohen.ss.abbvGapsHmm.Acronym
_shortForm - Variable in class com.wcohen.ss.abbvGapsHmm.Acronym
_sParam - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHMMEvaluator
_states - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsViterbiEvaluator
_trainingCorpusFile - Static variable in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
_trainingDataDir - Static variable in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel
_transitionCounters - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmExpectationEvaluator
_transitionParams - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmBackwardsEvaluator
_transitionParams - Variable in class com.wcohen.ss.abbvGapsHmm.AbbvGapsHmmForwardEvaluator
_trueLabelsFile - Static variable in class com.wcohen.ss.abbvGapsHmm.AlignmentPredictionModel

A B C D E F G H I J L M N O P R S T U V W _