Uses of Class
com.wcohen.ss.abbvGapsHmm.Matrix3D

Packages that use Matrix3D

Package	Description
com.wcohen.ss.abbvGapsHmm

Uses of Matrix3D in com.wcohen.ss.abbvGapsHmm

Fields in com.wcohen.ss.abbvGapsHmm declared as Matrix3D

Modifier and Type	Field and Description
protected Matrix3D	AbbvGapsHmmExpectationEvaluator._alpha
protected Matrix3D	AbbvGapsHmmBackwardsViterbiEvaluator._alpha
protected Matrix3D	AbbvGapsHmmExpectationEvaluator._beta
protected Matrix3D	AbbvGapsHmmBackwardsViterbiEvaluator._beta
protected Matrix3D	AbbvGapsHmmBackwardsViterbiEvaluator._emissions
protected Matrix3D	AbbvGapsHMMEvaluator._evalMat
protected Matrix3D	AbbvGapsHmmBackwardsViterbiEvaluator._prevLF
protected Matrix3D	AbbvGapsHmmBackwardsViterbiEvaluator._prevLF_stringPos
protected Matrix3D	AbbvGapsHmmBackwardsViterbiEvaluator._prevSF
protected Matrix3D	AbbvGapsHmmBackwardsViterbiEvaluator._prevSF_stringPos
protected Matrix3D	AbbvGapsHmmBackwardsViterbiEvaluator._states

Methods in com.wcohen.ss.abbvGapsHmm that return Matrix3D

Modifier and Type	Method and Description
Matrix3D	AbbvGapsHMMEvaluator.getEvalMatrix()
static Matrix3D	Matrix3D.identity(int N)
Matrix3D	Matrix3D.minus(Matrix3D B)
Matrix3D	Matrix3D.plus(Matrix3D B)
static Matrix3D	Matrix3D.random(int M, int N, int K)
Matrix3D	Matrix3D.times(double s)

Methods in com.wcohen.ss.abbvGapsHmm with parameters of type Matrix3D

Modifier and Type	Method and Description
boolean	Matrix3D.eq(Matrix3D B)
void	AbbvGapsHmmExpectationEvaluator.expectationEvaluate(Acronym acronym, List<Double> transitionCounters, List<Double> emissionCounters, List<Double> transitionParams, List<Double> emissionParams, Matrix3D alpha, Matrix3D beta)
Matrix3D	Matrix3D.minus(Matrix3D B)
Matrix3D	Matrix3D.plus(Matrix3D B)