com.wcohen.ss.abbvGapsHmm

Enum AbbvGapsHMM.Emissions

java.lang.Object

java.lang.Enum<AbbvGapsHMM.Emissions>

com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM.Emissions

All Implemented Interfaces:

Serializable, Comparable<AbbvGapsHMM.Emissions>

Enclosing class:

AbbvGapsHMM

public static enum AbbvGapsHMM.Emissions
extends Enum<AbbvGapsHMM.Emissions>

Enum Constant Summary

Enum Constants

Enum Constant and Description
e_D_alphaNumeric_to_none
e_D_none_to_nonAlphaNumeric
e_D_word_to_none
e_DL_alphaNumeric_to_none Deletions
e_DL_nonAlphaNumeric_to_none
e_DL_word_to_none
e_END_end End
e_M_AND_to_symbol Special substitutions
e_M_Antimony_Sb
e_M_commonWordDeletion
e_M_Copper_Cu
e_M_eight_to_8
e_M_five_to_5
e_M_four_to_4
e_M_Gold_Au
e_M_Iron_Fe
e_M_Lead_Pb
e_M_letter_to_letter
e_M_Mercury_Hg
e_M_nine_to_9
e_M_nonAlphaNumeric_to_none
e_M_one_to_1
e_M_partialWord_to_letter Substitutions
e_M_Potassium_K
e_M_seven_to_7
e_M_Silver_Ag Chemical Elements Substitution (For chemical elements with a symbol that does not match their common name)
e_M_six_to_6
e_M_Sodium_Na
e_M_three_to_3
e_M_Tin_Sn
e_M_Tungsten_W
e_M_two_to_2
e_M_word_to_firstLetter

Method Summary

Modifier and Type	Method and Description
static AbbvGapsHMM.Emissions	valueOf(String name) Returns the enum constant of this type with the specified name.
static AbbvGapsHMM.Emissions[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

e_DL_alphaNumeric_to_none

public static final AbbvGapsHMM.Emissions e_DL_alphaNumeric_to_none

Deletions

e_DL_nonAlphaNumeric_to_none

public static final AbbvGapsHMM.Emissions e_DL_nonAlphaNumeric_to_none

e_DL_word_to_none

public static final AbbvGapsHMM.Emissions e_DL_word_to_none

e_D_alphaNumeric_to_none

public static final AbbvGapsHMM.Emissions e_D_alphaNumeric_to_none

e_D_word_to_none

public static final AbbvGapsHMM.Emissions e_D_word_to_none

e_D_none_to_nonAlphaNumeric

public static final AbbvGapsHMM.Emissions e_D_none_to_nonAlphaNumeric

e_M_partialWord_to_letter

public static final AbbvGapsHMM.Emissions e_M_partialWord_to_letter

Substitutions

e_M_word_to_firstLetter

public static final AbbvGapsHMM.Emissions e_M_word_to_firstLetter

e_M_letter_to_letter

public static final AbbvGapsHMM.Emissions e_M_letter_to_letter

e_M_nonAlphaNumeric_to_none

public static final AbbvGapsHMM.Emissions e_M_nonAlphaNumeric_to_none

e_M_commonWordDeletion

public static final AbbvGapsHMM.Emissions e_M_commonWordDeletion

e_M_AND_to_symbol

public static final AbbvGapsHMM.Emissions e_M_AND_to_symbol

Special substitutions

e_M_one_to_1

public static final AbbvGapsHMM.Emissions e_M_one_to_1

e_M_two_to_2

public static final AbbvGapsHMM.Emissions e_M_two_to_2

e_M_three_to_3

public static final AbbvGapsHMM.Emissions e_M_three_to_3

e_M_four_to_4

public static final AbbvGapsHMM.Emissions e_M_four_to_4

e_M_five_to_5

public static final AbbvGapsHMM.Emissions e_M_five_to_5

e_M_six_to_6

public static final AbbvGapsHMM.Emissions e_M_six_to_6

e_M_seven_to_7

public static final AbbvGapsHMM.Emissions e_M_seven_to_7

e_M_eight_to_8

public static final AbbvGapsHMM.Emissions e_M_eight_to_8

e_M_nine_to_9

public static final AbbvGapsHMM.Emissions e_M_nine_to_9

e_M_Silver_Ag

public static final AbbvGapsHMM.Emissions e_M_Silver_Ag

Chemical Elements Substitution (For chemical elements with a symbol that does not match their common name)

e_M_Gold_Au

public static final AbbvGapsHMM.Emissions e_M_Gold_Au

e_M_Copper_Cu

public static final AbbvGapsHMM.Emissions e_M_Copper_Cu

e_M_Iron_Fe

public static final AbbvGapsHMM.Emissions e_M_Iron_Fe

e_M_Mercury_Hg

public static final AbbvGapsHMM.Emissions e_M_Mercury_Hg

e_M_Potassium_K

public static final AbbvGapsHMM.Emissions e_M_Potassium_K

e_M_Sodium_Na

public static final AbbvGapsHMM.Emissions e_M_Sodium_Na

e_M_Lead_Pb

public static final AbbvGapsHMM.Emissions e_M_Lead_Pb

e_M_Antimony_Sb

public static final AbbvGapsHMM.Emissions e_M_Antimony_Sb

e_M_Tin_Sn

public static final AbbvGapsHMM.Emissions e_M_Tin_Sn

e_M_Tungsten_W

public static final AbbvGapsHMM.Emissions e_M_Tungsten_W

e_END_end

public static final AbbvGapsHMM.Emissions e_END_end

End

Method Detail

values

public static AbbvGapsHMM.Emissions[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (AbbvGapsHMM.Emissions c : AbbvGapsHMM.Emissions.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static AbbvGapsHMM.Emissions valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null