com.wcohen.ss

Class SmithWaterman

java.lang.Object

com.wcohen.ss.AbstractStringDistance

com.wcohen.ss.SmithWaterman

All Implemented Interfaces:

StringDistance, StringDistanceLearner

public class SmithWaterman
extends AbstractStringDistance

Smith-Waterman string distance, following Durban et al. Sec 2.3.

Constructor Summary

Constructors

Constructor and Description
SmithWaterman()
SmithWaterman(CharMatchScore charMatchScore, double gapCost)

Method Summary

Modifier and Type	Method and Description
String	explainScore(StringWrapper s, StringWrapper t) This method needs to be implemented by subclasses.
static void	main(String[] argv)
double	score(StringWrapper s, StringWrapper t) This method needs to be implemented by subclasses.
String	toString()

Methods inherited from class com.wcohen.ss.AbstractStringDistance

addExample, doMain, explainScore, getDistance, hasNextQuery, nextQuery, prepare, prepare, prepare, score, setDistanceInstancePool, setStringWrapperPool

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SmithWaterman

public SmithWaterman()

SmithWaterman

public SmithWaterman(CharMatchScore charMatchScore,
                     double gapCost)

Method Detail

score

public double score(StringWrapper s,
                    StringWrapper t)

Description copied from class: AbstractStringDistance

This method needs to be implemented by subclasses.

Specified by:

score in interface StringDistance

Specified by:

score in class AbstractStringDistance

explainScore

public String explainScore(StringWrapper s,
                           StringWrapper t)

Description copied from class: AbstractStringDistance

This method needs to be implemented by subclasses.

Specified by:

explainScore in interface StringDistance

Specified by:

explainScore in class AbstractStringDistance

toString

public String toString()

Overrides:

toString in class Object

main

public static void main(String[] argv)