com.wcohen.ss

Class NeedlemanWunsch

java.lang.Object

com.wcohen.ss.AbstractStringDistance

com.wcohen.ss.NeedlemanWunsch

All Implemented Interfaces:

StringDistance, StringDistanceLearner

Direct Known Subclasses:

Levenstein

public class NeedlemanWunsch
extends AbstractStringDistance

Needleman-Wunsch string distance, following Durban et al. Sec 2.3.

Constructor Summary

Constructors

Constructor and Description
NeedlemanWunsch()
NeedlemanWunsch(CharMatchScore charMatchScore, double gapCost)

Method Summary

Modifier and Type	Method and Description
String	explainScore(StringWrapper s, StringWrapper t) This method needs to be implemented by subclasses.
static void	main(String[] argv)
double	score(StringWrapper s, StringWrapper t) This method needs to be implemented by subclasses.

Methods inherited from class com.wcohen.ss.AbstractStringDistance

addExample, doMain, explainScore, getDistance, hasNextQuery, nextQuery, prepare, prepare, prepare, score, setDistanceInstancePool, setStringWrapperPool

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NeedlemanWunsch

public NeedlemanWunsch()

NeedlemanWunsch

public NeedlemanWunsch(CharMatchScore charMatchScore,
                       double gapCost)

Method Detail

score

public double score(StringWrapper s,
                    StringWrapper t)

Description copied from class: AbstractStringDistance

This method needs to be implemented by subclasses.

Specified by:

score in interface StringDistance

Specified by:

score in class AbstractStringDistance

explainScore

public String explainScore(StringWrapper s,
                           StringWrapper t)

Description copied from class: AbstractStringDistance

This method needs to be implemented by subclasses.

Specified by:

explainScore in interface StringDistance

Specified by:

explainScore in class AbstractStringDistance

main

public static void main(String[] argv)