com.wcohen.ss

Class AffineGap

java.lang.Object

com.wcohen.ss.AbstractStringDistance

com.wcohen.ss.AffineGap

All Implemented Interfaces:

StringDistance, StringDistanceLearner

Direct Known Subclasses:

MongeElkan

public class AffineGap
extends AbstractStringDistance

Affine-gap string distance, following Durban et al. Sec 2.3.

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
protected class	AffineGap.MatrixTrio

Constructor Summary

Constructors

Constructor and Description
AffineGap()
AffineGap(CharMatchScore charMatchScore, double openGapScore, double extendGapScore, double lowerBound)

Method Summary

Modifier and Type	Method and Description
String	explainScore(StringWrapper s, StringWrapper t) This method needs to be implemented by subclasses.
static void	main(String[] argv)
double	score(StringWrapper s, StringWrapper t) This method needs to be implemented by subclasses.

Methods inherited from class com.wcohen.ss.AbstractStringDistance

addExample, doMain, explainScore, getDistance, hasNextQuery, nextQuery, prepare, prepare, prepare, score, setDistanceInstancePool, setStringWrapperPool

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AffineGap

public AffineGap()

AffineGap

public AffineGap(CharMatchScore charMatchScore,
                 double openGapScore,
                 double extendGapScore,
                 double lowerBound)

Method Detail

score

public double score(StringWrapper s,
                    StringWrapper t)

Description copied from class: AbstractStringDistance

This method needs to be implemented by subclasses.

Specified by:

score in interface StringDistance

Specified by:

score in class AbstractStringDistance

explainScore

public String explainScore(StringWrapper s,
                           StringWrapper t)

Description copied from class: AbstractStringDistance

This method needs to be implemented by subclasses.

Specified by:

explainScore in interface StringDistance

Specified by:

explainScore in class AbstractStringDistance

main

public static void main(String[] argv)