Hierarchy For All Packages

Package Hierarchies:

• org.openscience.cdk,
• org.openscience.cdk.aromaticity,
• org.openscience.cdk.event,
• org.openscience.cdk.fingerprint,
• org.openscience.cdk.geometry,
• org.openscience.cdk.geometry.volume,
• org.openscience.cdk.graph,
• org.openscience.cdk.graph.invariant,
• org.openscience.cdk.graph.matrix,
• org.openscience.cdk.graph.rebond,
• org.openscience.cdk.group,
• org.openscience.cdk.isomorphism,
• org.openscience.cdk.isomorphism.mcss,
• org.openscience.cdk.math,
• org.openscience.cdk.qsar,
• org.openscience.cdk.qsar.result,
• org.openscience.cdk.ringsearch,
• org.openscience.cdk.smiles,
• org.openscience.cdk.stereo,
• org.openscience.cdk.tools,
• org.openscience.cdk.tools.manipulator,
• org.openscience.cdk.validate

Class Hierarchy

• java.lang.Object
  • org.openscience.cdk.fingerprint.AbstractFingerprinter (implements org.openscience.cdk.fingerprint.IFingerprinter)
    • org.openscience.cdk.fingerprint.Fingerprinter (implements org.openscience.cdk.fingerprint.IFingerprinter)
      • org.openscience.cdk.fingerprint.GraphOnlyFingerprinter
      • org.openscience.cdk.fingerprint.HybridizationFingerprinter (implements org.openscience.cdk.fingerprint.IFingerprinter)
  • org.openscience.cdk.ringsearch.AllRingsFinder
  • org.openscience.cdk.tools.manipulator.AminoAcidManipulator
  • org.openscience.cdk.aromaticity.Aromaticity
  • org.openscience.cdk.tools.manipulator.AtomContainerComparator (implements java.util.Comparator<T>)
  • org.openscience.cdk.tools.manipulator.AtomContainerComparatorBy2DCenter (implements java.util.Comparator<T>)
  • org.openscience.cdk.tools.manipulator.AtomContainerManipulator
  • org.openscience.cdk.tools.manipulator.AtomContainerSetManipulator
  • org.openscience.cdk.isomorphism.AtomMappingTools
  • org.openscience.cdk.tools.manipulator.AtomTypeManipulator
  • org.openscience.cdk.qsar.AtomValenceTool
  • org.openscience.cdk.fingerprint.BitSetFingerprint (implements org.openscience.cdk.fingerprint.IBitFingerprint)
  • org.openscience.cdk.geometry.BondTools
  • org.openscience.cdk.qsar.result.BooleanResultType (implements org.openscience.cdk.qsar.result.IDescriptorResult)
    • org.openscience.cdk.qsar.result.BooleanResult
  • org.openscience.cdk.graph.rebond.Bspt
  • org.openscience.cdk.graph.invariant.Canon
  • org.openscience.cdk.graph.invariant.CanonicalLabeler
  • org.openscience.cdk.tools.manipulator.ChemFileManipulator
  • org.openscience.cdk.tools.manipulator.ChemModelManipulator
  • org.openscience.cdk.tools.manipulator.ChemSequenceManipulator
  • org.openscience.cdk.graph.matrix.ConnectionMatrix (implements org.openscience.cdk.graph.matrix.IGraphMatrix)
  • org.openscience.cdk.graph.ConnectivityChecker
  • org.openscience.cdk.geometry.CrystalGeometryTools
  • org.openscience.cdk.qsar.DescriptorSpecification (implements org.openscience.cdk.IImplementationSpecification, java.io.Serializable)
  • org.openscience.cdk.qsar.DescriptorValue (implements java.io.Serializable)
  • org.openscience.cdk.group.DisjointSetForest
  • org.openscience.cdk.qsar.result.DoubleArrayResultType (implements org.openscience.cdk.qsar.result.IDescriptorResult)
    • org.openscience.cdk.qsar.result.DoubleArrayResult
  • org.openscience.cdk.qsar.result.DoubleResult (implements org.openscience.cdk.qsar.result.IDescriptorResult)
  • org.openscience.cdk.qsar.result.DoubleResultType (implements org.openscience.cdk.qsar.result.IDescriptorResult)
  • org.openscience.cdk.aromaticity.ElectronDonation
  • org.openscience.cdk.tools.ElementComparator (implements java.util.Comparator<T>)
  • org.openscience.cdk.fingerprint.FingerprinterTool
  • org.openscience.cdk.tools.FormatStringBuffer
  • org.openscience.cdk.math.FortranFormat
  • org.openscience.cdk.geometry.GeometryUtil
  • org.openscience.cdk.tools.HOSECodeGenerator (implements java.io.Serializable)
  • org.openscience.cdk.tools.IDCreator
  • org.openscience.cdk.fingerprint.IntArrayCountFingerprint (implements org.openscience.cdk.fingerprint.ICountFingerprint)
  • org.openscience.cdk.fingerprint.IntArrayFingerprint (implements org.openscience.cdk.fingerprint.IBitFingerprint)
  • org.openscience.cdk.qsar.result.IntegerArrayResultType (implements org.openscience.cdk.qsar.result.IDescriptorResult)
    • org.openscience.cdk.qsar.result.IntegerArrayResult
  • org.openscience.cdk.qsar.result.IntegerResult (implements org.openscience.cdk.qsar.result.IDescriptorResult)
  • org.openscience.cdk.qsar.result.IntegerResultType (implements org.openscience.cdk.qsar.result.IDescriptorResult)
  • org.openscience.cdk.smiles.InvPair (implements java.io.Serializable)
  • org.openscience.cdk.isomorphism.IsomorphismTester (implements java.io.Serializable)
  • org.openscience.cdk.aromaticity.Kekulization
  • org.openscience.cdk.tools.LonePairElectronChecker
  • org.openscience.cdk.graph.Matching
  • org.openscience.cdk.tools.manipulator.MoleculeSetManipulator
  • org.openscience.cdk.graph.invariant.MorganNumbersTools
  • org.openscience.cdk.graph.Permutor
    • org.openscience.cdk.graph.AtomContainerPermutor (implements java.util.Iterator<E>)
      • org.openscience.cdk.graph.AtomContainerAtomPermutor
      • org.openscience.cdk.graph.AtomContainerBondPermutor
  • org.openscience.cdk.graph.rebond.Point (implements org.openscience.cdk.graph.rebond.Bspt.Tuple)
  • org.openscience.cdk.math.Primes
  • org.openscience.cdk.validate.ProblemMarker
  • java.util.Random (implements java.io.Serializable)
    • org.openscience.cdk.math.RandomNumbersTool
  • org.openscience.cdk.tools.manipulator.ReactionManipulator
  • org.openscience.cdk.tools.manipulator.ReactionSchemeManipulator
  • org.openscience.cdk.tools.manipulator.ReactionSetManipulator
  • org.openscience.cdk.graph.rebond.RebondTool
  • org.openscience.cdk.isomorphism.mcss.RGraph
  • org.openscience.cdk.tools.manipulator.RingManipulator
  • org.openscience.cdk.ringsearch.RingPartitioner
  • org.openscience.cdk.tools.manipulator.RingSetManipulator
  • org.openscience.cdk.tools.manipulator.RingSizeComparator (implements java.util.Comparator<T>)
  • org.openscience.cdk.isomorphism.mcss.RMap
  • org.openscience.cdk.isomorphism.mcss.RNode
  • org.openscience.cdk.stereo.Stereocenters
  • org.openscience.cdk.stereo.StereoElementFactory
  • org.openscience.cdk.stereo.StereoTool
  • org.openscience.cdk.isomorphism.UniversalIsomorphismTester
  • org.openscience.cdk.geometry.volume.VABCVolume

Interface Hierarchy

• org.openscience.cdk.graph.rebond.Bspt.Tuple
• java.util.EventListener
  • org.openscience.cdk.event.ICDKSelectionChangeListener
• org.openscience.cdk.IImplementationSpecification
• java.io.Serializable
  • org.openscience.cdk.qsar.result.IDescriptorResult

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.openscience.cdk.geometry.GeometryUtil.CoordinateCoverage
    • org.openscience.cdk.ringsearch.AllRingsFinder.Threshold
    • org.openscience.cdk.stereo.StereoTool.StereoClass
    • org.openscience.cdk.stereo.StereoTool.TetrahedralSign
    • org.openscience.cdk.stereo.StereoTool.SquarePlanarShape
    • org.openscience.cdk.stereo.Stereocenters.Stereocenter
    • org.openscience.cdk.stereo.Stereocenters.Type
    • org.openscience.cdk.stereo.Projection