org.openscience.cdk.fingerprint

Class IntArrayCountFingerprint

java.lang.Object

org.openscience.cdk.fingerprint.IntArrayCountFingerprint

All Implemented Interfaces:

Serializable, ICountFingerprint

public class IntArrayCountFingerprint
extends Object
implements ICountFingerprint

Author:

jonalv

See Also:

Serialized Form

Source code:

master

Belongs to CDK module:

standard

Constructor Summary

Constructors

Constructor and Description
IntArrayCountFingerprint()
IntArrayCountFingerprint(Map<String,Integer> rawFingerprint)
IntArrayCountFingerprint(Map<String,Integer> rawFingerprint, boolean behaveAsBitFingerprint) Create an IntArrayCountFingerprint from a rawFingerprint and if behaveAsBitFingerprint make it only return 0 or 1 as count thus behaving like a bit finger print.

Method Summary

Modifier and Type	Method and Description
int	getCount(int index)
int	getCountForHash(int hash)
int	getHash(int index)
boolean	hasHash(int hash)
void	merge(ICountFingerprint fp)
int	numOfPopulatedbins()
void	setBehaveAsBitFingerprint(boolean behaveAsBitFingerprint)
long	size()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IntArrayCountFingerprint

public IntArrayCountFingerprint()

IntArrayCountFingerprint

public IntArrayCountFingerprint(Map<String,Integer> rawFingerprint)

IntArrayCountFingerprint

public IntArrayCountFingerprint(Map<String,Integer> rawFingerprint,
                                boolean behaveAsBitFingerprint)

Create an IntArrayCountFingerprint from a rawFingerprint and if behaveAsBitFingerprint make it only return 0 or 1 as count thus behaving like a bit finger print.

Parameters:

rawFingerprint -

behaveAsBitFingerprint -

Method Detail

size

public long size()

Specified by:

size in interface ICountFingerprint

getCount

public int getCount(int index)

Specified by:

getCount in interface ICountFingerprint

getHash

public int getHash(int index)

Specified by:

getHash in interface ICountFingerprint

numOfPopulatedbins

public int numOfPopulatedbins()

Specified by:

numOfPopulatedbins in interface ICountFingerprint

merge

public void merge(ICountFingerprint fp)

Specified by:

merge in interface ICountFingerprint

setBehaveAsBitFingerprint

public void setBehaveAsBitFingerprint(boolean behaveAsBitFingerprint)

Specified by:

setBehaveAsBitFingerprint in interface ICountFingerprint

hasHash

public boolean hasHash(int hash)

Specified by:

hasHash in interface ICountFingerprint

getCountForHash

public int getCountForHash(int hash)

Specified by:

getCountForHash in interface ICountFingerprint