Deprecated API

Contents

• Deprecated Fields
• Deprecated Methods
• Deprecated Constructors

Deprecated Fields

Field and Description
org.openscience.cdk.smiles.SmiFlavor.AtomicMassStrict no longer needed, default CDK behaviour is now to pass through mass numbers if non-null

Deprecated Methods

Method and Description
org.openscience.cdk.smiles.SmilesGenerator.aromatic() configure with SmiFlavor
org.openscience.cdk.smiles.SmilesGenerator.createReactionSMILES(IReaction) use SmilesGenerator.create(IAtomContainer)
org.openscience.cdk.smiles.SmilesGenerator.createSMILES(IAtomContainer) use #create
org.openscience.cdk.smiles.SmilesGenerator.createSMILES(IReaction) use #createReactionSMILES
org.openscience.cdk.smiles.SmilesParser.isPreservingAromaticity()
org.openscience.cdk.smiles.SmilesParser.setPreservingAromaticity(boolean)
org.openscience.cdk.smiles.SmilesGenerator.setUseAromaticityFlag(boolean) since 1.5.6, use SmilesGenerator.aromatic() - invoking this method does nothing
org.openscience.cdk.smiles.SmilesGenerator.withAtomClasses() configure with SmiFlavor

Deprecated Constructors

Constructor and Description
org.openscience.cdk.smiles.SmilesGenerator() use SmilesGenerator.SmilesGenerator(int) configuring with SmiFlavor.