org.openscience.cdk.isomorphism.matchers

Class OrderQueryBondOrderOnly

java.lang.Object

org.openscience.cdk.isomorphism.matchers.QueryChemObject

org.openscience.cdk.isomorphism.matchers.QueryBond

org.openscience.cdk.isomorphism.matchers.OrderQueryBondOrderOnly

All Implemented Interfaces:

Cloneable, IBond, ICDKObject, IChemObject, IElectronContainer, IQueryBond

public class OrderQueryBondOrderOnly
extends QueryBond
implements IQueryBond

IQueryBond that matches IBond object only based on bond order, and disregarding any aromaticity flag.

Source code:

master

Belongs to CDK module:

isomorphism

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.interfaces.IBond

IBond.Order, IBond.Stereo

Field Summary

Fields inherited from class org.openscience.cdk.isomorphism.matchers.QueryBond

atomCount, atoms, electronCount, order, stereo

Constructor Summary

Constructors

Constructor and Description
OrderQueryBondOrderOnly(IChemObjectBuilder builder)
OrderQueryBondOrderOnly(IQueryAtom atom1, IQueryAtom atom2, IBond.Order order, IChemObjectBuilder builder)

Method Summary

Modifier and Type	Method and Description
boolean	matches(IBond bond)
void	setAtomAt(IAtom atom, int position)
void	setAtoms(IAtom[] atoms) Sets the array of atoms making up this query bond.

Methods inherited from class org.openscience.cdk.isomorphism.matchers.QueryBond

atoms, clone, compare, contains, get2DCenter, get3DCenter, getAtom, getAtomCount, getBegin, getConnectedAtom, getConnectedAtoms, getContainer, getElectronCount, getEnd, getIndex, getOrder, getOther, getStereo, isAromatic, isConnectedTo, isInRing, setAtom, setElectronCount, setIsAromatic, setIsInRing, setOrder, setStereo, toString

Methods inherited from class org.openscience.cdk.isomorphism.matchers.QueryChemObject

addListener, addProperties, getBuilder, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, matches, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.openscience.cdk.interfaces.IBond

atoms, clone, compare, contains, get2DCenter, get3DCenter, getAtom, getAtomCount, getBegin, getConnectedAtom, getConnectedAtoms, getContainer, getEnd, getIndex, getOrder, getOther, getStereo, isAromatic, isConnectedTo, isInRing, setAtom, setIsAromatic, setIsInRing, setOrder, setStereo

Methods inherited from interface org.openscience.cdk.interfaces.IElectronContainer

getElectronCount, setElectronCount

Methods inherited from interface org.openscience.cdk.interfaces.IChemObject

addListener, addProperties, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, toString

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject

getBuilder

Constructor Detail

OrderQueryBondOrderOnly

public OrderQueryBondOrderOnly(IChemObjectBuilder builder)

OrderQueryBondOrderOnly

public OrderQueryBondOrderOnly(IQueryAtom atom1,
                               IQueryAtom atom2,
                               IBond.Order order,
                               IChemObjectBuilder builder)

Method Detail

matches

public boolean matches(IBond bond)

Specified by:

matches in interface IQueryBond

setAtoms

public void setAtoms(IAtom[] atoms)

Description copied from class: QueryBond

Sets the array of atoms making up this query bond.

Specified by:

setAtoms in interface IBond

Overrides:

setAtoms in class QueryBond

Parameters:

atoms - An array of atoms that forms this query bond

See Also:

QueryBond.atoms

setAtomAt

public void setAtomAt(IAtom atom,
                      int position)