Uses of Class
org.openscience.cdk.isomorphism.Pattern

Packages that use Pattern

Package	Description
org.openscience.cdk.isomorphism

Uses of Pattern in org.openscience.cdk.isomorphism

Subclasses of Pattern in org.openscience.cdk.isomorphism

Modifier and Type	Class and Description
class	Ullmann A structure pattern which utilises the Ullmann algorithm [Ullmann J R, An Algorithm for Subgraph Isomorphism, Journal of the Association for Computing Machinery, 1976, 23:?-?, doi:10.1145/321921.321925].
class	VentoFoggia A structure pattern which utilises the Vento-Foggia (VF) algorithm [Cordella Luigi P and Foggia Pasquale and Carlo Sansone and Vento Mario , A (Sub)Graph Isomorphism Algorithm for Matching Large Graphs, IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2004, 26:10].

Methods in org.openscience.cdk.isomorphism that return Pattern

Modifier and Type	Method and Description
static Pattern	VentoFoggia.findIdentical(IAtomContainer query) Create a pattern which can be used to find molecules which are the same as the query structure.
static Pattern	Pattern.findIdentical(IAtomContainer query) Create a pattern which can be used to find molecules which are the same as the query structure.
static Pattern	VentoFoggia.findIdentical(IAtomContainer query, AtomMatcher atomMatcher, BondMatcher bondMatcher) Create a pattern which can be used to find molecules which are the same as the query structure.
static Pattern	VentoFoggia.findSubstructure(IAtomContainer query) Create a pattern which can be used to find molecules which contain the query structure.
static Pattern	Ullmann.findSubstructure(IAtomContainer query) Create a pattern which can be used to find molecules which contain the query structure.
static Pattern	Pattern.findSubstructure(IAtomContainer query) Create a pattern which can be used to find molecules which contain the query structure.
static Pattern	VentoFoggia.findSubstructure(IAtomContainer query, AtomMatcher atomMatcher, BondMatcher bondMatcher) Create a pattern which can be used to find molecules which contain the query structure.