| Package | Description |
|---|---|
| org.openscience.cdk.io | |
| org.openscience.cdk.io.cml |
| Modifier and Type | Method and Description |
|---|---|
void |
CMLReader.registerConvention(String convention,
ICMLModule conv) |
| Modifier and Type | Interface and Description |
|---|---|
interface |
ICMLConvention
This interface describes the procedures classes must implement to be plugable
into the CMLHandler.
|
| Modifier and Type | Class and Description |
|---|---|
class |
CDKConvention
This is an implementation for the CDK convention.
|
class |
CMLCoreModule
Core CML 1.x and 2.x elements are parsed by this class (see [Willighagen, E.L., Processing CML Conventions in Java, Internet Journal of Chemistry, 2001, 4:?-?]).
|
class |
CMLReactionModule |
class |
JMOLANIMATIONConvention |
class |
MDLMolConvention
Implementation of the MDLMol Covention for CML.
|
class |
PDBConvention
Implements the PDB convention used by PDB2CML.
|
class |
PMPConvention
Implementation of the PMPMol Covention for CML.
|
class |
QSARConvention
This is an implementation for the CDK convention.
|
| Modifier and Type | Method and Description |
|---|---|
ICMLModule |
CMLModuleStack.current()
Returns the last added entry.
|
ICMLModule |
CMLModuleStack.pop()
Retrieves and deletes to last added entry.
|
| Modifier and Type | Method and Description |
|---|---|
boolean |
CMLModuleStack.endsWith(ICMLModule lastElement)
Convenience method to check the last added elements.
|
boolean |
CMLModuleStack.endsWith(ICMLModule oneButLast,
ICMLModule lastElement)
Convenience method to check the last two added elements.
|
boolean |
CMLModuleStack.endsWith(ICMLModule twoButLast,
ICMLModule oneButLast,
ICMLModule lastElement)
Convenience method to check the last three added elements.
|
void |
ICMLModule.inherit(ICMLModule conv) |
void |
CMLCoreModule.inherit(ICMLModule convention) |
void |
CMLModuleStack.push(ICMLModule item)
Adds an entry to the stack.
|
void |
CMLHandler.registerConvention(String convention,
ICMLModule conv) |
| Constructor and Description |
|---|
CDKConvention(ICMLModule conv) |
CMLCoreModule(ICMLModule conv) |
CMLReactionModule(ICMLModule conv) |
JMOLANIMATIONConvention(ICMLModule conv) |
MDLMolConvention(ICMLModule conv) |
PDBConvention(ICMLModule conv) |
PMPConvention(ICMLModule conv) |
QSARConvention(ICMLModule conv) |
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