org.openscience.cdk.io

Class Mol2Reader

java.lang.Object

org.openscience.cdk.io.ChemObjectIO

org.openscience.cdk.io.DefaultChemObjectReader

org.openscience.cdk.io.Mol2Reader

All Implemented Interfaces:

Closeable, AutoCloseable, IChemObjectIO, IChemObjectReader, ISimpleChemObjectReader

public class Mol2Reader
extends DefaultChemObjectReader

Reads a molecule from an Mol2 file, such as written by Sybyl. See the specs here.

Author:

Egon Willighagen

Source code:

master

Belongs to CDK module:

io

Keywords:

file format, Mol2

Created on:

2003-08-21

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader

IChemObjectReader.Mode

Field Summary

Fields inherited from class org.openscience.cdk.io.DefaultChemObjectReader

errorHandler, mode

Constructor Summary

Constructors

Constructor and Description
Mol2Reader()
Mol2Reader(InputStream input)
Mol2Reader(Reader in) Constructs a new MDLReader that can read Molecule from a given Reader.

Method Summary

Modifier and Type	Method and Description
boolean	accepts(Class<? extends IChemObject> classObject)
boolean	accepts(IChemObject object)
void	close()
IResourceFormat	getFormat()
<T extends IChemObject> T	read(T object)
void	setReader(InputStream input)
void	setReader(Reader input)

Methods inherited from class org.openscience.cdk.io.DefaultChemObjectReader

fireFrameRead, handleError, handleError, handleError, handleError, setErrorHandler, setReaderMode

Methods inherited from class org.openscience.cdk.io.ChemObjectIO

addChemObjectIOListener, addSetting, addSettings, fireIOSettingQuestion, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.openscience.cdk.io.IChemObjectIO

addChemObjectIOListener, addSetting, addSettings, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Constructor Detail

Mol2Reader

public Mol2Reader(Reader in)

Constructs a new MDLReader that can read Molecule from a given Reader.

Parameters:

in - The Reader to read from

Mol2Reader

public Mol2Reader(InputStream input)

Mol2Reader

public Mol2Reader()

Method Detail

getFormat

public IResourceFormat getFormat()

setReader

public void setReader(Reader input)
               throws CDKException

Throws:

CDKException

setReader

public void setReader(InputStream input)
               throws CDKException

Throws:

CDKException

accepts

public boolean accepts(Class<? extends IChemObject> classObject)

read

public <T extends IChemObject> T read(T object)
                               throws CDKException

Throws:

CDKException

accepts

public boolean accepts(IChemObject object)

close

public void close()
           throws IOException

Throws:

IOException