4.0.0 org.broadinstitute gatk 4.2.4.1 GATK4 Development on GATK 4 http://github.com/broadinstitute/gatk Apache 2.0 https://github.com/broadinstitute/gatk/blob/master/LICENSE.TXT repo gatkdev GATK Development Team gatk-dev-public@broadinstitute.org scm:git@github.com:broadinstitute/gatk.git scm:git@github.com:broadinstitute/gatk.git scm:git@github.com:broadinstitute/gatk.git org.broadinstitute barclay 4.0.2 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.aeonbits.owner owner 1.0.9 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo com.github.broadinstitute picard 2.25.4 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.genomicsdb genomicsdb 1.4.3 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo spark-sql_2.12 * protobuf-java * spark-core_2.12 * htsjdk * log4j-api * log4j-core * com.opencsv opencsv 3.4 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo com.google.guava guava 27.1-jre runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo com.github.samtools htsjdk 2.24.1 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo com.google.cloud google-cloud-nio 0.117.0-alpha shaded runtime * * com.google.cloud google-cloud-bigquery 1.117.1 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo com.google.cloud google-cloud-bigquerystorage 1.5.1 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo gov.nist.math.jama gov.nist.math.jama 1.1.1 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo com.google.cloud.bigdataoss gcs-connector 1.9.4-hadoop3 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.apache.logging.log4j log4j-api 2.17.1 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.apache.logging.log4j log4j-core 2.17.1 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.apache.logging.log4j log4j-jcl 2.17.1 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.apache.commons commons-lang3 3.5 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.apache.commons commons-math3 3.5 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.apache.commons commons-collections4 4.1 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.apache.commons commons-vfs2 2.0 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.apache.commons commons-configuration2 2.4 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.apache.httpcomponents httpclient 4.5.12 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo commons-beanutils commons-beanutils 1.9.3 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo commons-io commons-io 2.5 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.reflections reflections 0.9.10 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo it.unimi.dsi fastutil 7.0.6 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.broadinstitute hdf5-java-bindings 1.1.0-hdf5_2.11.0 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.broadinstitute gatk-native-bindings 1.0.0 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.ojalgo ojalgo 44.0.0 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.ojalgo ojalgo-commons-math3 1.0.0 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo * org.apache.commons org.apache.spark spark-mllib_2.11 2.4.5 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo com.thoughtworks.paranamer paranamer 2.8 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.bdgenomics.bdg-formats bdg-formats 0.5.0 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.bdgenomics.adam adam-core-spark2_2.11 0.28.0 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo * org.slf4j * org.scala-lang hadoop-bam * * org.apache.hadoop kryo * org.jgrapht jgrapht-core 0.9.1 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.disq-bio disq 0.3.6 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.apache.hadoop hadoop-client 3.2.1 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo com.github.jsr203hadoop jsr203hadoop 1.0.3 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo de.javakaffee kryo-serializers 0.41 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo kryo * org.objenesis objenesis 1.2 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo com.github.fommil.netlib netlib-native_ref-osx-x86_64 1.1 natives runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo com.github.fommil.netlib netlib-native_ref-linux-x86_64 1.1 natives runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo com.github.fommil.netlib netlib-native_system-linux-x86_64 1.1 natives runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo com.github.fommil.netlib netlib-native_system-osx-x86_64 1.1 natives runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo com.esotericsoftware kryo 3.0.3 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo asm org.ow2.asm reflectasm com.esotericsoftware com.esotericsoftware reflectasm 1.10.0 shaded runtime * * com.intel.gkl gkl 0.8.8 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo htsjdk * org.broadinstitute gatk-bwamem-jni 1.0.4 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.broadinstitute gatk-fermilite-jni 1.2.0 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.broadinstitute http-nio 0.1.0-rc1 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo org.xerial sqlite-jdbc 3.36.0.3 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo biz.k11i xgboost-predictor 0.3.0 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo net.grey-panther natural-comparator 1.1 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo com.fasterxml.jackson.module jackson-module-scala_2.11 2.9.8 runtime slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava junit junit jul-to-slf4j * javax.servlet * servlet-api * * com.esotericsoftware.kryo