All Known Subinterfaces:

StringGraph
```
public interface ObjectGraph<T>
```
Author:

Tim Boudreau

Method Summary

All Methods Instance Methods Abstract Methods Default Methods
Modifier and Type	Method	Description
`List<Score<T>>`	`apply(RankingAlgorithm<?> alg)`
`Set<T>`	`bottomLevelNodes()`	Get the set of nodes which have no outbound edges.
`List<T>`	`byClosureSize()`	Get a list of the nodes in the graph sorted by the size of their closure.
`List<T>`	`byReverseClosureSize()`	Get a list of the nodes in the graph sorted by the size of their reverse closure (all paths to the top of the graph from this node).
`Set<T>`	`children(T node)`	Get the set of string node names which are immediate child nodes of a given one (if the graph is cyclic, this may include the node name passed).
`Set<T>`	`closureOf(T node)`	Get the closure of this node in the graph - all nodes which are reachable following outbound edges from this node and its descendants.
`int`	`closureSize(T node)`	Determine the size of the closure of this node, following outbound edges to the bottom of the graph, traversing each node once.
`default Set<T>`	`disjunctionOfClosureOfHighestRankedNodes()`	This requires some explaining - it is used to pick the initial set of colorings that are active - attempting to find nodes that are likely to be ones someone would want flagged.
`default int`	`distance(T a, T b)`	Get the distance along the shortest path between two node.
`Set<String>`	`edgeStrings()`	For logging convenience, get a list of strings that identify the edges present in this graph.
`default List<Score<T>>`	`eigenvectorCentrality()`	Compute the eigenvector centrality - "most likely to be connected through" - score for each node.
`int`	`inboundReferenceCount(T node)`	Count the number of nodes that have outbound edges to the passed node.
`boolean`	`isUnreferenced(T node)`	Returns true if this node has no inbound edges.
`int`	`outboundReferenceCount(T node)`	Count the number of nodes this node has outbound edges to.
`default List<Score<T>>`	`pageRank()`	Compute the pagerank score of every node in the graph.
`Set<T>`	`parents(T node)`	Get the set of strings which are immediate parent nodes to a given one (if the graph is cyclic, this may include the node name passed).
`List<ObjectPath<T>>`	`pathsBetween(T a, T b)`
`Set<T>`	`reverseClosureOf(T node)`	Get the reverse closure of a node in the graph - all nodes which have an outbound edge to this node, and all nodes which have an outbound edge to one of those, and so forth, to the top of the graph.
`int`	`reverseClosureSize(T node)`	Determine the size of the inverse closure of this node, following inbound edges to the top of the graph, traversing each node once.
`void`	`save(ObjectOutput out)`	Optimized serialization support.
`T`	`toNode(int index)`
`int`	`toNodeId(T name)`
`Set<T>`	`topLevelOrOrphanNodes()`	Get the set of nodes which have no inbound edges.
`default void`	`walk(ObjectGraphVisitor<? super T> v)`	Walk the tree of nodes in some order, such that each node is only visited once.
`default void`	`walk(T startingWith, ObjectGraphVisitor<? super T> v)`	Walk the tree of node definitions and node references in some order, starting from the passed starting node.
`default void`	`walkUpwards(T startingWith, ObjectGraphVisitor<? super T> v)`	Walk the antecedents of a node.

- Method Detail
  - byClosureSize
```
List<T> byClosureSize()
```
    Get a list of the nodes in the graph sorted by the size of their closure.
    
    Returns:
    
    A list of string node names
  - byReverseClosureSize
```
List<T> byReverseClosureSize()
```
    Get a list of the nodes in the graph sorted by the size of their reverse closure (all paths to the top of the graph from this node).
    
    Returns:
    
    A list of string node names
  - edgeStrings
```
Set<String> edgeStrings()
```
    For logging convenience, get a list of strings that identify the edges present in this graph.
    
    Returns:
  - parents
```
Set<T> parents(T node)
```
    Get the set of strings which are immediate parent nodes to a given one (if the graph is cyclic, this may include the node name passed).
    
    Parameters:
    
    node - A node name
    
    Returns:
    
    The set of parents
  - children
```
Set<T> children(T node)
```
    Get the set of string node names which are immediate child nodes of a given one (if the graph is cyclic, this may include the node name passed).
    
    Parameters:
    
    node - The node name
    
    Returns:
    
    A set of child node names
  - inboundReferenceCount
```
int inboundReferenceCount(T node)
```
    Count the number of nodes that have outbound edges to the passed node. Will be zero if it has none.
    
    Parameters:
    
    node - The node name
    
    Returns:
    
    A count of edges
  - outboundReferenceCount
```
int outboundReferenceCount(T node)
```
    Count the number of nodes this node has outbound edges to.
    
    Parameters:
    
    node - The node name
    
    Returns:
    
    A count of edges
  - topLevelOrOrphanNodes
```
Set<T> topLevelOrOrphanNodes()
```
    Get the set of nodes which have no inbound edges.
    
    Returns:
    
    A set of node names
  - bottomLevelNodes
```
Set<T> bottomLevelNodes()
```
    Get the set of nodes which have no outbound edges.
    
    Returns:
    
    A set of nodes
  - isUnreferenced
```
boolean isUnreferenced(T node)
```
    Returns true if this node has no inbound edges.
    
    Parameters:
    
    node - A node
    
    Returns:
    
    Whether or not it has inbound edges
  - closureSize
```
int closureSize(T node)
```
    Determine the size of the closure of this node, following outbound edges to the bottom of the graph, traversing each node once.
    
    Parameters:
    
    node - A node
    
    Returns:
    
    The size of its closure
  - reverseClosureSize
```
int reverseClosureSize(T node)
```
    Determine the size of the inverse closure of this node, following inbound edges to the top of the graph, traversing each node once.
    
    Parameters:
    
    node -
    
    Returns:
  - reverseClosureOf
```
Set<T> reverseClosureOf(T node)
```
    Get the reverse closure of a node in the graph - all nodes which have an outbound edge to this node, and all nodes which have an outbound edge to one of those, and so forth, to the top of the graph.
    
    Parameters:
    
    node - A node name
    
    Returns:
    
    A set of nodes
  - closureOf
```
Set<T> closureOf(T node)
```
    Get the closure of this node in the graph - all nodes which are reachable following outbound edges from this node and its descendants.
    
    Parameters:
    
    node - A node name
    
    Returns:
    
    A set of nodes
  - walk
```
default void walk(ObjectGraphVisitor<? super T> v)
```
    Walk the tree of nodes in some order, such that each node is only visited once.
    
    Parameters:
    
    v - A visitor
  - walk
```
default void walk(T startingWith,
                  ObjectGraphVisitor<? super T> v)
```
    Walk the tree of node definitions and node references in some order, starting from the passed starting node.
    
    Parameters:
    
    startingWith - The starting node
    
    v - A visitor
  - walkUpwards
```
default void walkUpwards(T startingWith,
                         ObjectGraphVisitor<? super T> v)
```
    Walk the antecedents of a node.
    
    Parameters:
    
    startingWith - The starting node
    
    v - A visitor
  - distance
```
default int distance(T a,
                     T b)
```
    Get the distance along the shortest path between two node.
    
    Parameters:
    
    a - One node
    
    b - Another node
    
    Returns:
    
    the distance
  - eigenvectorCentrality
```
default List<Score<T>> eigenvectorCentrality()
```
    Compute the eigenvector centrality - "most likely to be connected *through*" - score for each node. This finds nodes which are most critical - connectors - in the node graph.
    
    Returns:
  - pageRank
```
default List<Score<T>> pageRank()
```
    Compute the pagerank score of every node in the graph.
    
    Returns:
  - disjunctionOfClosureOfHighestRankedNodes
```
default Set<T> disjunctionOfClosureOfHighestRankedNodes()
```
    This requires some explaining - it is used to pick the initial set of colorings that are active - attempting to find nodes that are likely to be ones someone would want flagged. The algorithm is this: Rank the nodes according to their pagerank. That typically gets important but common grammar elements such as "expression" or "arguments". Take the top third of those nodes - these will be the most connected to nodes. Then take the closure of each of those - the set of nodes it or nodes it calls touches, and xor them to get the disjunction of their closures. That gives you those nodes which are called indirectly or directly by *one* of the highly ranked nodes, but none of the others. These have a decent chance of being unique things one would like distinct syntax highlighting for.
    
    Returns:
  - save
```
void save(ObjectOutput out)
   throws IOException
```
    Optimized serialization support.
    
    Parameters:
    
    out - The output
    
    Throws:
    
    IOException - If something goes wrong
  - toNodeId
```
int toNodeId(T name)
```
  - toNode
```
T toNode(int index)
```
  - apply
```
List<Score<T>> apply(RankingAlgorithm<?> alg)
```
  - pathsBetween
```
List<ObjectPath<T>> pathsBetween(T a,
                                 T b)
```

Interface ObjectGraph<T>

Method Summary

Method Detail

byClosureSize

byReverseClosureSize

edgeStrings

parents

children

inboundReferenceCount

outboundReferenceCount

topLevelOrOrphanNodes

bottomLevelNodes

isUnreferenced

closureSize

reverseClosureSize

reverseClosureOf

closureOf

walk

walk

walkUpwards

distance

eigenvectorCentrality

pageRank

disjunctionOfClosureOfHighestRankedNodes

save

toNodeId

toNode

apply

pathsBetween