Constant Field Values

Contents

• ch.epfl.*
• org.apache.*

ch.epfl.*

ch.epfl.bbp.uima.BlueUima

Modifier and Type	Constant Field	Value
public static final String	PARAM_AND_QUERY	"and_query"
public static final String	PARAM_ANNOTATION_CLASS	"annotationClass"
public static final String	PARAM_ANNOTATION_CLASSES	"annotationClasses"
public static final String	PARAM_ANNOTATION_FIELD	"annotationField"
public static final String	PARAM_ANNOTATION_FIELDS	"annotationFields"
public static final String	PARAM_BETWEEN	"between"
public static final String	PARAM_CASE_SENSITIVE	"caseSensitive"
public static final String	PARAM_COOCCURRENCE_TYPE	"cooccurrenceType"
public static final String	PARAM_CORPUS_ANNOTATIONS_PATH	"corpusAnnotationsFile"
public static final String	PARAM_CORPUS_NAME	"corpusName"
public static final String	PARAM_CORPUS_PATH	"corpusFile"
public static final String	PARAM_CORPUS_ROOT	"corpusRoot"
public static final String	PARAM_DB_CONNECTION	"db_connection"
public static final String	PARAM_DIRECTORY_ITERATOR	"directoryIterator"
public static final String	PARAM_ENCLOSING_SCOPE	"enclosingScope"
public static final String	PARAM_FEATURE_NAME	"featureName"
public static final String	PARAM_FIELD_NAME	"field_name"
public static final String	PARAM_FILE_EXTENSION_FILTER	"fileExtensionFilter"
public static final String	PARAM_FIRST_ANNOT	"annot1"
public static final String	PARAM_FIRST_ANNOT_ID_FIELD	"annot1IdField"
public static final String	PARAM_FIRST_ANNOT_TYPE	"annot1Type"
public static final String	PARAM_FORMAT	"format"
public static final String	PARAM_INDEX_NAME	"index_name"
public static final String	PARAM_INPUT	"input"
public static final String	PARAM_INPUT_DIRECTORY	"inputDirectory"
public static final String	PARAM_INPUT_FILE	"inputFile"
public static final String	PARAM_IS_RECURSIVE	"isRecursive"
public static final String	PARAM_MAX_NR_RESULTS	"maxNrResults"
public static final String	PARAM_MODE	"corpus_mode"
public static final String	PARAM_MODEL	"model"
public static final String	PARAM_MODEL_FILE	"modelFile"
public static final String	PARAM_OUTPUT_DIR	"outputDir"
public static final String	PARAM_OUTPUT_FILE	"outputFile"
public static final String	PARAM_PATH_PREFIX	"pathPrefix"
public static final String	PARAM_QUERY	"query"
public static final String	PARAM_SECOND_ANNOT	"annot2"
public static final String	PARAM_SECOND_ANNOT_ID_FIELD	"annot2IdField"
public static final String	PARAM_SECOND_ANNOT_TYPE	"annot2Type"
public static final String	PARAM_SKIP_EMPTY_DOCS	"skipEmptyDocs"
public static final String	PARAM_VERBOSE	"verbose"
public static final String	PARAM_VIEW	"view"
public static final String	PATH_NFS4_EXTRACTED_PDFS	"/nfs4/bbp.epfl.ch/simulation/nlp//data/extracted_pdfs/"
public static final String	PATH_NFS4_NLP	"/nfs4/bbp.epfl.ch/simulation/nlp/"
public static final String	RESOURCES_PATH	"src/main/resources/"
public static final String	SECTION_TYPE_ABSTRACT	"abstract"
public static final String	SECTION_TYPE_COPYRIGHT	"copyright"
public static final String	SECTION_TYPE_REFERENCES	"references"
public static final String	SECTION_TYPE_TITLE	"title"
public static final String	TEST_RESOURCES_PATH	"src/test/resources/"
public static final String	VIEW_GOLD	"view_gold"
public static final String	VIEW_SYSTEM	"_InitialView"

ch.epfl.bbp.uima.ae.CopyAnnotationsAnnotator

Modifier and Type	Constant Field	Value
public static final String	DELETE_FROM	"deleteFrom"
public static final String	FROM_ANNOTATION	"from"
public static final String	FROM_VIEW	"fromView"
public static final String	TO_ANNOTATION	"to"
public static final String	TO_VIEW	"toView"

ch.epfl.bbp.uima.ae.CopyAnnotationsAnnotator2

Modifier and Type	Constant Field	Value
public static final String	DELETE_FROM	"deleteFrom"
public static final String	FROM_VIEW	"fromView"
public static final String	TO_VIEW	"toView"

ch.epfl.bbp.uima.ae.EvaluationPreprocessorAnnotator

Modifier and Type	Constant Field	Value
public static final String	DELETE_FROM	"deleteFrom"
public static final String	PARAM_GOLD_ANNOTATION	"gold_annotation"
public static final String	PARAM_SYSTEM_ANNOTATION	"system_annotation"
public static final String	VIEW_GOLD	"view_gold"
public static final String	VIEW_SYSTEM	"_InitialView"

ch.epfl.bbp.uima.ae.GarbageCollectorAnnotator

Modifier and Type	Constant Field	Value
public static final String	RUN_EVERY_N_DOCUMENTS	"runEveryNDocument"

ch.epfl.bbp.uima.ae.GridSearchConfiguration

Modifier and Type	Constant Field	Value
public static final String	COMBINAISON_INDEX	"combinaisonIndex"

ch.epfl.bbp.uima.ae.RegexTokenizerAnnotator

Modifier and Type	Constant Field	Value
public static final String	PARAM_TOKENIZATION_PATTERN	"tokenizationPattern"
public static final String	patterPunctDigitsCamelcase	"(?<=\\w)(?=\\W)|(?<=\\W)(?=\\w)|(?<=[A-Z])(?=[a-z])|(?<=\\d)(?=\\D)|(?<=\\D)(?=\\d)"
public static final String	patterPunctuation	"(?<=\\w)(?=\\W)|(?<=\\W)(?=\\w)"
public static final String	patterPunctuationNoDash	"(?<=[(a-zA-Z_0-9\\-)])(?=[^(a-zA-Z_0-9\\-)])|(?<=[^(a-zA-Z_0-9\\-)])(?=[(a-zA-Z_0-9\\-)])"

ch.epfl.bbp.uima.ae.StatsAnnotatorPlus

Modifier and Type	Constant Field	Value
public static final String	PARAM_PRINT_EVERY	"printEvery"

ch.epfl.bbp.uima.ae.output.AnnotationTypeWriter

Modifier and Type	Constant Field	Value
public static final String	PARAM_FILTER_FEATURES_WITH_VALUE	"filterFeaturesWithValue"

ch.epfl.bbp.uima.ae.output.BartWriter

Modifier and Type	Constant Field	Value
public static final String	PARAM_ADD_BRAT_FILES	"addBratFiles"
public static final String	PARAM_BATCH_PREFIX	"batchPrefix"
public static final String	PARAM_DEBUG	"debug"
public static final String	PARAM_WRITE_NOTES	"notes"
public static final String	SPLIT_PER_PAGE	"splitPerPage"

ch.epfl.bbp.uima.ae.output.LdaCWriter

Modifier and Type	Constant Field	Value
public static final String	PARAM_DCA_FORMAT	"dcaFormat"
public static final String	PARAM_IDS_OUTPUT_FILE	"idsOutputFile"
public static final String	PARAM_VOCABULARY_INPUT_FILE	"vocabularyInputFile"
public static final String	PARAM_VOCABULARY_OUTPUT_FILE	"vocabularyOutputFile"

ch.epfl.bbp.uima.ae.output.XWriter

Modifier and Type	Constant Field	Value
public static final String	PARAM_FILE_NAMER_CLASS_NAME	"fileNamerClassName"
public static final String	PARAM_XML_SCHEME_NAME	"xmlSchemeName"
public static final String	XCAS	"XCAS"
public static final String	XMI	"XMI"

ch.epfl.bbp.uima.ae.output.ZipXWriter

Modifier and Type	Constant Field	Value
public static final String	PARAM_FILE_NAMER_CLASS_NAME	"fileNamerClassName"
public static final String	PARAM_STRUCTURE_DIR	"dirStructure"
public static final String	PARAM_XML_SCHEME_NAME	"xmlSchemeName"
public static final String	XCAS	"XCAS"
public static final String	XMI	"XMI"

ch.epfl.bbp.uima.ae.relations.ExtractCoocurrences

Modifier and Type	Constant Field	Value
public static final String	PARAM_KEEP_ONLY_NEAREST_NEIGHBORS	"keepOnlyNearestNeighbors"

ch.epfl.bbp.uima.ae.relations.ExtractCoocurrencesFilterDistance

Modifier and Type	Constant Field	Value
public static final String	PARAM_MAXIMUM_DISTANCE	"maximumDistance"

ch.epfl.bbp.uima.ae.relations.FilterCoocurrencesByDistance

Modifier and Type	Constant Field	Value
public static final String	PARAM_MAXIMUM_DISTANCE	"maximumDistance"

ch.epfl.bbp.uima.ae.relations.FilterCoocurrencesIfTooManyEntities

Modifier and Type	Constant Field	Value
public static final String	PARAM_MAXIMUM_ENTITIES	"maximumEntities"

ch.epfl.bbp.uima.ae.relations.FilterCoocurrencesInLongSentences

Modifier and Type	Constant Field	Value
public static final String	PARAM_MAXIMUM_SCOPE_LENGTH	"maximumEnclosingScopeLength"

ch.epfl.bbp.uima.ae.relations.WriteCoocurrencesToLoadfile

Modifier and Type	Constant Field	Value
public static final String	PARAM_WRITE_SNIPPETS	"writeSnippets"

ch.epfl.bbp.uima.ae.serialization.BinaryCasWriter

Modifier and Type	Constant Field	Value
public static final String	EXTENTION_GZ	"gz"

ch.epfl.bbp.uima.annotationviewer.BlueAnnotationViewerAnnotator

Modifier and Type	Constant Field	Value
public static final String	STYLE_MAP	"styleMap"

ch.epfl.bbp.uima.cr.OneDocPerLineIdsReader

Modifier and Type	Constant Field	Value
public static final String	PARAM_VOCABULARY_INPUT_FILE	"vocabularyInputFile"

ch.epfl.bbp.uima.cr.TextLineReader

Modifier and Type	Constant Field	Value
public static final String	PARAM_SPLIT_MODE	"splitMode"

ch.epfl.bbp.uima.cr.XCollectionReader

Modifier and Type	Constant Field	Value
public static final String	PARAM_XML_SCHEME	"xmlSchemeName"
public static final String	XCAS	"XCAS"
public static final String	XMI	"XMI"

ch.epfl.bbp.uima.cr.ZipXmiCollectionReader

Modifier and Type	Constant Field	Value
public static final String	PARAM_XML_SCHEME	"xmlSchemeName"
public static final String	XCAS	"XCAS"
public static final String	XMI	"XMI"

ch.epfl.bbp.uima.filter.FrequencyFilterAnnotator

Modifier and Type	Constant Field	Value
public static final String	MAXIMUM_FREQUENCY	"maximumFrequency"
public static final String	MINIMUM_FREQUENCY	"minimumFrequency"

ch.epfl.bbp.uima.filter.MeasureNormalizerAnnotator

Modifier and Type	Constant Field	Value
public static final String	MEASURE_MASK	"MEASURE___"
public static final String	PARAM_REMOVE_DATE_MEASURE	"removeDateMeasure"
public static final String	PARAM_REMOVE_SIMPLE_MEASURE	"removeSimpleMeasure"

ch.epfl.bbp.uima.filter.SentenceFilterAnnotator

Modifier and Type	Constant Field	Value
public static final String	PARAM_REGEX	"regex"

ch.epfl.bbp.uima.testutils.UimaTests

Modifier and Type	Constant Field	Value
public static final String	TEST_ABSTRACT	"An automated clean up and concentration method by column switching is described for the assay of mitoxantrone, an antitumour drug in plasma. The system uses a YWG-CN short precolumn for on-line clean up and concentration and a Shimpack CLC-ODS analytical column for separation. Water is used as pretreat mobile phase and 48% methanol in ammonium acetate (0.2 mol/L pH 1.9) is used as analytical mobile phase. The plasma sample is treated with methanol and ultrasonated for 10 min. The supernatant of treated sample is directly injected to precolumn. The recovery of clean up is 85%. The wavelength used for detection is 658 nm and the concentration of detection limit is 6 ng/ml in plasma. The procedure is simple and the method is sensitive."
public static final String	TEST_DEPENDENCY	"Altogether, our results suggest that NAC might impair the generation of primary immune responses in humans through its inhibitory action on DC."
public static final String	TEST_SENTENCE	"Using this calibration procedure, we find that mature granule cells (doublecortin-) contain approximately 40 microm, and newborn granule cells (doublecortin+) contain 0-20 microm calbindin-D28k."

ch.epfl.bbp.uima.validation.CrossvalidationReader

Modifier and Type	Constant Field	Value
public static final String	PARAM_MODE_EVAL	"modeEval"
public static final String	PARAM_SEED	"seed"
public static final String	PARAM_SLICE	"slice"
public static final String	PARAM_SPLITS	"splits"

org.apache.*

org.apache.uima.fit.component.xwriter.IntegerFileNamer

Modifier and Type	Constant Field	Value
public static final String	PARAM_PREFIX	"prefix"
public static final String	PARAM_START_AT	"startAt"