| Class | Description |
|---|---|
| CooccurrencesEvaluationAnnotator |
Evaluates if two
Cooccurrence's entities are the same. |
| CooccurrencesEvaluationAnnotator2 |
Evaluates
Cooccurrences for
projects/extract_brainregions/20140221_slurm_extraction In particular, evaluates permutations of the 3 extractors |
| ExtractCoocurrences |
Extracts cooccurrences
|
| ExtractCoocurrencesFilterDistance | Deprecated |
| ExtractSameCoocurrences |
Extracts cooccurrences of the same
Annotation class. |
| FilterCoocurrencesByDistance |
Filters cooccurrences whose two entities are separated by more that the
specified distance.
|
| FilterCoocurrencesByNot |
Filters cooccurrences whose sentence contains `not?`.
|
| FilterCoocurrencesByStopwords | Deprecated |
| FilterCoocurrencesByTriggerword |
Filters cooccurrences whose sentence contains keywords.
|
| FilterCoocurrencesIfTooManyEntities |
Filters cooccurrences if more than
FilterCoocurrencesIfTooManyEntities.PARAM_MAXIMUM_ENTITIES occur in a
sentence. |
| FilterCoocurrencesInLongSentences |
Filters
Cooccurrences if the enclosing scope (e.g. |
| FilterInactiveCooccurrencesAnnotator |
Filters
Cooccurrences with Cooccurrence.getHasInteraction() =
false |
| WriteCoocurrencesToLoadfile |
Extracts cooccurences
Format:
`pubmed_id`,`annot_1_id`,`annot_1_start`,`annot_1_end`,` annot_2_id`,` annot_2_start`,`annot_2_end` Import: cd to {outputFileDir}cd . |
| WriteCoocurrencesToLoadfile2 |
Extracts
Cooccurrences. |
| WriteCoocurrencesToLoadfile3 |
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