ch.epfl.bbp.uima.ae.relations

Class ExtractSameCoocurrences

java.lang.Object

org.apache.uima.analysis_component.AnalysisComponent_ImplBase

org.apache.uima.analysis_component.Annotator_ImplBase

org.apache.uima.analysis_component.JCasAnnotator_ImplBase

org.apache.uima.fit.component.JCasAnnotator_ImplBase

ch.epfl.bbp.uima.ae.relations.ExtractCoocurrences

ch.epfl.bbp.uima.ae.relations.ExtractSameCoocurrences

All Implemented Interfaces:

org.apache.uima.analysis_component.AnalysisComponent

public class ExtractSameCoocurrences
extends ExtractCoocurrences

Extracts cooccurrences of the same Annotation class.

Author:

renaud.richardet@epfl.ch

See Also:

WriteCoocurrencesToLoadfile to write these cooccurrences to a file

Field Summary

Fields inherited from class ch.epfl.bbp.uima.ae.relations.ExtractCoocurrences

annotation1, annotation2, annotationStr1, annotationStr2, cooccurrenceType, enclosingScope, enclosingScopeStr, firstIdFields, firstIdFieldsRaw, firstIdMethods, keepOnlyNearestNeighbors, LOG, PARAM_KEEP_ONLY_NEAREST_NEIGHBORS, secondIdFields, secondIdFieldsRaw, secondIdMethods

Constructor Summary

Constructors

Constructor and Description
ExtractSameCoocurrences()

Method Summary

Methods

Modifier and Type	Method and Description
protected Cooccurrence	filterCooccurence(org.apache.uima.jcas.JCas jCas, org.apache.uima.jcas.tcas.Annotation enclosingAnnot, org.apache.uima.jcas.tcas.Annotation annot1, org.apache.uima.jcas.tcas.Annotation annot2, String[] ids1, String[] ids2) only add 1/2 the co-occurences, otherwise they would be counted 2 times.
void	initialize(org.apache.uima.UimaContext context)

Methods inherited from class ch.epfl.bbp.uima.ae.relations.ExtractCoocurrences

process

Methods inherited from class org.apache.uima.fit.component.JCasAnnotator_ImplBase

getLogger

Methods inherited from class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

getRequiredCasInterface, process

Methods inherited from class org.apache.uima.analysis_component.Annotator_ImplBase

getCasInstancesRequired, hasNext, next

Methods inherited from class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

batchProcessComplete, collectionProcessComplete, destroy, getContext, getResultSpecification, reconfigure, setResultSpecification

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExtractSameCoocurrences

public ExtractSameCoocurrences()

Method Detail

initialize

public void initialize(org.apache.uima.UimaContext context)
                throws org.apache.uima.resource.ResourceInitializationException

Specified by:

initialize in interface org.apache.uima.analysis_component.AnalysisComponent

Overrides:

initialize in class ExtractCoocurrences

Throws:

org.apache.uima.resource.ResourceInitializationException

filterCooccurence

protected Cooccurrence filterCooccurence(org.apache.uima.jcas.JCas jCas,
                             org.apache.uima.jcas.tcas.Annotation enclosingAnnot,
                             org.apache.uima.jcas.tcas.Annotation annot1,
                             org.apache.uima.jcas.tcas.Annotation annot2,
                             String[] ids1,
                             String[] ids2)

only add 1/2 the co-occurences, otherwise they would be counted 2 times.

Overrides:

filterCooccurence in class ExtractCoocurrences