ch.epfl.bbp.uima.ae.relations

Class CooccurrencesEvaluationAnnotator

java.lang.Object

org.apache.uima.analysis_component.AnalysisComponent_ImplBase

org.apache.uima.analysis_component.Annotator_ImplBase

org.apache.uima.analysis_component.JCasAnnotator_ImplBase

org.apache.uima.fit.component.JCasAnnotator_ImplBase

ch.epfl.bbp.uima.ae.relations.CooccurrencesEvaluationAnnotator

All Implemented Interfaces:

org.apache.uima.analysis_component.AnalysisComponent

public class CooccurrencesEvaluationAnnotator
extends org.apache.uima.fit.component.JCasAnnotator_ImplBase

Evaluates if two Cooccurrence's entities are the same. Any entities can be used, since they are compared on start/end of them.

Author:

renaud.richardet@epfl.ch

See Also:

EvaluationAnnotator}

Constructor Summary

Constructors

Constructor and Description
CooccurrencesEvaluationAnnotator()

Method Summary

Methods

Modifier and Type	Method and Description
static boolean	areTheSame(Cooccurrence gold, Cooccurrence system)
void	collectionProcessComplete()
static Comparator<Cooccurrence>	comp()
static boolean	contains(Collection<Cooccurrence> haystack, Cooccurrence needle)
static <A extends org.apache.uima.jcas.tcas.Annotation,B extends org.apache.uima.jcas.tcas.Annotation> TestEvaluator<A,B>	getEvaluator()
void	initialize(org.apache.uima.UimaContext context)
void	process(org.apache.uima.jcas.JCas jCas)

Methods inherited from class org.apache.uima.fit.component.JCasAnnotator_ImplBase

getLogger

Methods inherited from class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

getRequiredCasInterface, process

Methods inherited from class org.apache.uima.analysis_component.Annotator_ImplBase

getCasInstancesRequired, hasNext, next

Methods inherited from class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

batchProcessComplete, destroy, getContext, getResultSpecification, reconfigure, setResultSpecification

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CooccurrencesEvaluationAnnotator

public CooccurrencesEvaluationAnnotator()

Method Detail

initialize

public void initialize(org.apache.uima.UimaContext context)
                throws org.apache.uima.resource.ResourceInitializationException

Specified by:

initialize in interface org.apache.uima.analysis_component.AnalysisComponent

Overrides:

initialize in class org.apache.uima.fit.component.JCasAnnotator_ImplBase

Throws:

org.apache.uima.resource.ResourceInitializationException

process

public void process(org.apache.uima.jcas.JCas jCas)
             throws org.apache.uima.analysis_engine.AnalysisEngineProcessException

Specified by:

process in class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

Throws:

org.apache.uima.analysis_engine.AnalysisEngineProcessException

collectionProcessComplete

public void collectionProcessComplete()
                               throws org.apache.uima.analysis_engine.AnalysisEngineProcessException

Specified by:

collectionProcessComplete in interface org.apache.uima.analysis_component.AnalysisComponent

Overrides:

collectionProcessComplete in class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

Throws:

org.apache.uima.analysis_engine.AnalysisEngineProcessException

getEvaluator

public static <A extends org.apache.uima.jcas.tcas.Annotation,B extends org.apache.uima.jcas.tcas.Annotation> TestEvaluator<A,B> getEvaluator()

areTheSame

public static boolean areTheSame(Cooccurrence gold,
                 Cooccurrence system)

Returns:

true if both Cooccurrence.getFirstEntity() and Cooccurrence.getSecondEntity() have same begin/end in gold and system

comp

public static Comparator<Cooccurrence> comp()

contains

public static boolean contains(Collection<Cooccurrence> haystack,
               Cooccurrence needle)