Package ch.epfl.bbp.uima.ae

Class Summary

Class	Description
CopyAnnotationsAnnotator	Copies specified annotations into other specified annotations, then removes the former.
CopyAnnotationsAnnotator2	Copies specified annotations into other specified annotations, then removes the former.
DeduplicatorAnnotator	Removes duplicates annotations that have same Class, same begin and same end.
DotSentenceSplitterAnnotator	Splits an input text into Sentences at each dot.
EnsureDocHasHeader	Ensures that all CASes have a Header annotation, sets it to a random value otherwise otherwise.
EnsureDocHasOneSentence	Ensures that the jCas has at lease one Sentence annotation, sets it to the whole text otherwise.
EnsureDocTextNotNullAnnotator	Ensures that the text of a CAS is not null, sets it to "" otherwise
EnsureTokensHaveLemmaAndPOS	Checks that each Token has a POS and a lemma, sets otherwise the POS to a "null" string, resp.
EntityNormalizerAnnotator	Sets Keep#setNormalizedText() for each Keep which encloses an entity (recognized by a ConceptMapper) to the canonical form of the entity.
EvaluationAnnotator	Evaluates precision, recall and f-score, comparing annotations in Gold sofa with the annotions in normal view.
EvaluationPreprocessorAnnotator	Copies specified annotation to view_gold (later used by EvaluationAnnotator) and removes it from the _InitialView.
GarbageCollectorAnnotator	"Forces" to run the garbage collection every N document.
GeneralEnglishAnnotator	Annotates general English words.
GridSearchConfiguration	Utility/hack to perform in-place (statically configured) parameter configuration for grid-search optimization.
KeepLargestAnnotationAnnotator	Prunes/dedupes overlapping Annotations, keeps the largest one.
LucasHelperAnnotator	Adds e.g.
MultipleProteinsAnnotator	Adds a MultipleProteins annotations if there is more that one Protein in this document
NaiveSentenceSplitterAnnotator	Sentence splitter that outputs the content of the whole CAS text as one single Sentence.
NewlineSentenceSplitterAnnotator	Splits an input text into Sentences at each new line.
PunctuationAnnotator	Annotates Tokens consisting (exclusively) of punctuation chars.
RegexTokenizerAnnotator	Tokenizer that can be configured with a regex Pattern.
RemoveAnnotationsAnnotator	Removes specific annotation from the CASes
SkipSomePosAnnotator	Annotate (flags) tokens that have an "uninteresting" POS, like V.., W.., DT or TO, IN, ...
SnowballAnnotator	Snowball stemmer annotator for Tokens
StaticConfiguration	Utility to perform in-place (statically configured) parameter configuration for optimization. Parameters are set like this: paramName{space}paramType{space}value1{space}value2... Examples: o1: myparam1 bool true o2: myparam2 int 3 o3: myparam2 dble 3.14 o4: myparam3 string asdf Then, in your java code you can retreive the vales using the StaticOption.getXXX methods
StatsAnnotatorPlus	Logs statistics about the progress of the pipeline to the console.
TestAnnotator	Tests the number of annotations on each CAS.
WhitespaceTokenizerAnnotator	Simple whitespace tokenizer.